MmuINT0051243 @ mm9
Intron Retention
Gene
ENSMUSG00000056752 | Dnahc9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65768319-65768868:-
Coord C1 exon
chr11:65768707-65768868
Coord A exon
chr11:65768553-65768706
Coord C2 exon
chr11:65768319-65768552
Length
154 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
CTCATTATTTCTGGTGCTAGCCT
3' ss Score
3.12
Exon sequences
Seq C1 exon
GTGACTCTCTGTTTCTCCCCTGTGGGGAACAAGCTGAGAATTCGAAGCAGGAAGTTCCCAGCCATTGTGAACTGTACTGCTATCAACTGGTTCCATGAGTGGCCTCAGGAGGCCCTAGAGTCTGTGAGCCTCCGATTCTTGCAGAATACAAAGAACATTGAG
Seq A exon
GTGAGAGGGAACAGAGCTCCCCTGAGGGTCCACCTCACCTTAGGCATCCAGGGGTCAAGGTTAAAGTTGGAGGTTGGATAGAACCATGGAACATAACTTTCCATATGGTCAAGGGTTGGGTGATCATGTTCAATCTCATTATTTCTGGTGCTAG
Seq C2 exon
CCTGCGGTGAAGCAGTCAATTAGCAAGTTCATGGCCTTTGTCCACATAAGTGTCAACAAGACATCCCAGTCATACCTGACCAATGAGCAGCGATACAACTACACAACACCCAAGTCCTTTCTGGAGTTCATCAGACTGTACCAGAGCTTGCTGGAGAGAAATGGAAAAGAGCTCCAGGCCAAGGTGGAGAGGCTGGAGAACGGGCTGTTGAAACTGCACAGCACCTCGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-Dnahc9:NM_001099633:47
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(19.8=100)
A:
NA
C2:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.4=19.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGCCTCCGATTCTTGCAG
R:
GTTTCAACAGCCCGTTCTCCA
Band lengths:
253-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: