BtaINT0050827 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31150365-31150905:+
Coord C1 exon
chr19:31150365-31150526
Coord A exon
chr19:31150527-31150671
Coord C2 exon
chr19:31150672-31150905
Length
145 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TCCCTGCCATTTGATTCTAGACC
3' ss Score
7.56
Exon sequences
Seq C1 exon
GTGACTCTTTGCTTCTCCCCGGTGGGGCCCAACCTGAGGGTCCGCAGCAGGAAGTTCCCCGCCATCGTGAACTGCACGGCCATTGTCTGGTTCCACGAGTGGCCAAAACAGGCCCTGGAGTCTGTCAGCCTCCGCTTCCTGCAGAACACGGAAGGCGTTGAG
Seq A exon
GTGAGAGGGCAGAGGAGACACCCCTCATGCTCCTCTCCACCTCAGGGAGTGAGGGGTCCCCCATCCGGCCCATTGAGCCAAGTGGGCAGTCACCTGCCATCAGCATGGCCAGGTGACCTCTTTATTCCCTGCCATTTGATTCTAG
Seq C2 exon
ACCACAGTCAAGCCATCAGTTAGTGAGTTCATGGCTTTCGTCCACACAAGTGTCAACCACACCTCCCAGTCCTATCTGAGCAACGAGCAGCGCTACAACTACACAACGCCCAAATCATTCCTGGAGTTCATCAGACTCTACCAGAGCCTGCTGCGCAGGAACGGGAGGGAGCTCAGGTCCAAGATGGAGCGGCTGGAGAACGGGTTGCTGAAGCTCCACAGCACCTCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509:ENSBTAT00000006131:59
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(19.8=100)
A:
NA
C2:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.4=19.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAACAGGCCCTGGAGTCTG
R:
ATCTTGGACCTGAGCTCCCTC
Band lengths:
244-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development