RnoINT0049274 @ rn6
Intron Retention
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52465900-52466451:-
Coord C1 exon
chr10:52466290-52466451
Coord A exon
chr10:52466134-52466289
Coord C2 exon
chr10:52465900-52466133
Length
156 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
CATTACTTCTGGTGTGTTAGCCT
3' ss Score
2.25
Exon sequences
Seq C1 exon
GTGACTCTCTGTTTCTCCCCTGTGGGGAACAAGCTGAGAATTCGAAGCAGGAAGTTCCCAGCCATTGTGAACTGTACTGCTATCAACTGGTTCCACGAGTGGCCTCAGGAGGCACTGGAGTCTGTGAGCCTCCGTTTCTTGCAGAATACAAAGAACATTGAG
Seq A exon
GTAAGAGGGAAAAGGGCTCCCCTGAGGGTCCACCTCACCTTAGGCATCCCGGGGTCAAGGTTAAAGTTGGAGATTGGATAGAACCATTGAGCATAACTTTCTATGGCGTCAAGGGTTGGATAATCATAGTCAAACTCATTACTTCTGGTGTGTTAG
Seq C2 exon
CCTGCAGTGAAGCAATCGATTAGCAAGTTCATGGCCTTTGTCCACATAAGTGTCAACAAGATATCCCAGTCATACCTGATCAATGAGCAGCGCTACAACTACACCACTCCCAAGTCCTTTCTGGAGTTCATCAGACTATACCAGAGCTTGCTGGAGAGGAATGGAAAAGAGCTCCAGTCCAAGGTGGAAAGGCTGGAGAATGGGCTGTTAAAGCTGCACAGCACCTCAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171:ENSRNOT00000005583:47
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(19.8=100)
A:
NA
C2:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.4=19.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTGTGAGCCTCCGTTTCT
R:
CCATTCTCCAGCCTTTCCACC
Band lengths:
247-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]