DreINT0059686 @ danRer10
Intron Retention
Gene
ENSDARG00000079420 | dpp4
Description
dipeptidyl-peptidase 4 [Source:ZFIN;Acc:ZDB-GENE-081104-277]
Coordinates
chr22:11610843-11611156:-
Coord C1 exon
chr22:11611062-11611156
Coord A exon
chr22:11610976-11611061
Coord C2 exon
chr22:11610843-11610975
Length
86 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
3' ss Seq
AAGGATCTGTTTTGTTCCAGAGA
3' ss Score
6.74
Exon sequences
Seq C1 exon
GCTGGAACCCCAAACCCAACTGTAAAACTGTTTGTTTTTGATACAAACACAAACACCATCAAGCAAGTCTCGGTTCCCAGTGATGTTGGTGCCGG
Seq A exon
GTAAGGGGTTTTAGTTTTTTTTCATAGATGTTTTCAGTCAGATATAATAATGATCTGACCGAACAGAAGGATCTGTTTTGTTCCAG
Seq C2 exon
AGAGCACTATCTGAGCACTGTCACATGGGCGTCAGACCACCGAATCGCAGTGCAGTGGCAGAAAAGAACGCAGAATTATGTCGTTTTGGAAACGTATGACTTCAACGATGGAAACTGGACTGAAGGTTCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079420:ENSDART00000109596:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(8.6=100)
A:
NA
C2:
PF0093016=DPPIV_N=FE(12.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAACCCCAAACCCAACTG
R:
TCTGCGTTCTTTTCTGCCACT
Band lengths:
168-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]