GgaINT0046617 @ galGal3
Intron Retention
Gene
ENSGALG00000011099 | FAP
Description
NA
Coordinates
chr7:22657362-22657914:+
Coord C1 exon
chr7:22657362-22657468
Coord A exon
chr7:22657469-22657778
Coord C2 exon
chr7:22657779-22657914
Length
310 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTC
5' ss Score
6.8
3' ss Seq
CTCTTTCATTTATTTTTTAGTGA
3' ss Score
8.89
Exon sequences
Seq C1 exon
AAGGCTGGTGCTAAAAATCCTACTGTTAAAGTGTTCATTGTAGACACTACTAACATTGAAGCATTTGGTCCTAAAGAGGTGCCAGTTCCTGCAGTGATTGCATCAAG
Seq A exon
GTATTCTGCCCTCAAAATATGTCATCAGAGTTTTTTAAAAAACTGTTTGTCTGCTTGTTTTAAATGCTTGAAACTCTGAATTGTTTTGTTAACAGTGGAGTGCCATATTAATCTCACAGATGCATCAGAAGATAAGTAGAAATATACATGGATTCACATGATATATTGCTACAAAGGAAAAAAAATATTCCTAATAAAATAGAAGATTTGCTGTTGTCTTCCACAGAGAAAAATGGGGTTATAGTCTGTAGAAATTTTTCTGTATTCCTGCTGTTTAATAACCAGTCTTTCTCTTTCATTTATTTTTTAG
Seq C2 exon
TGATCATTATTTTACTTGGCTTACTTGGGTAACAGATAGTCGAGTTGGTGTGCAATGGCTAAAGAGAATCCAAAATTTTTCAGTCTTAGCTATTTGTGACTTCAAAGAAAATTCAAATACTTGGGACTGTCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011099:ENSGALT00000018083:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(9.5=100)
A:
NA
C2:
PF0093016=DPPIV_N=FE(12.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGTGCTAAAAATCCTACTGT
R:
TCTGGACAGTCCCAAGTATTTGA
Band lengths:
240-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]