DreINT0059690 @ danRer10
Intron Retention
Gene
ENSDARG00000079420 | dpp4
Description
dipeptidyl-peptidase 4 [Source:ZFIN;Acc:ZDB-GENE-081104-277]
Coordinates
chr22:11608387-11608613:-
Coord C1 exon
chr22:11608543-11608613
Coord A exon
chr22:11608441-11608542
Coord C2 exon
chr22:11608387-11608440
Length
102 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
TTTTTCTTTATTCTTGACAGATA
3' ss Score
10.39
Exon sequences
Seq C1 exon
ACACAAAGGATATTTCTGACCAGGGGGAAGTGGGAGGTCATTAGCATCCTTAAAGTCACAAATAATGCATT
Seq A exon
GTAAGTAAATTGACTGAAAAATTATCTAGTTTTTTCTCTTTTATGATTTTTATTTTCCACTCACTGCTTTTTTTTTCTTTTTTTTTTCTTTATTCTTGACAG
Seq C2 exon
ATACTTTGTGAGTAATGAACATAATGAGAGTCCGGGCCAGAGGAACGTTTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079420:ENSDART00000109596:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(6.4=100)
A:
NA
C2:
PF0093016=DPPIV_N=FE(5.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGGATATTTCTGACCAGGGGG
R:
TTGTAAACGTTCCTCTGGCCC
Band lengths:
122-224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]