HsaINT0051777 @ hg38
Intron Retention
Gene
ENSG00000197635 | DPP4
Description
dipeptidyl peptidase 4 [Source:HGNC Symbol;Acc:HGNC:3009]
Coordinates
chr2:162019223-162020296:-
Coord C1 exon
chr2:162020229-162020296
Coord A exon
chr2:162019277-162020228
Coord C2 exon
chr2:162019223-162019276
Length
952 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
TCATTTTTTTCTCTTCCTAGATA
3' ss Score
10.71
Exon sequences
Seq C1 exon
GACTGCACATTTATTACAAAAGGCACCTGGGAAGTCATCGGGATAGAAGCTCTAACCAGTGATTATCT
Seq A exon
GTGAGTATTGTAACAATTGATAGGATATAAACCTACTTGTCATAATCATGCCCTCTTTGCCCAGAAGTAGGGAAAAAATCTCCTACAAATAAAGAGTAGTCTTTTTGGAATGTGTTCAATACTTTTTTTCTTTTTAACATACGGAAGCCTTAATGATTTTCACATATGCTTAGCAGATTTGATACCATGCCACCAGGCAGCTCTACCTCTTGCTCTTACCTGCTTTACATTACAAGAGCTGTATCCTCTTTTACATGAACGTTGTGGAACGCCGAACTAGCAATGAGGGGCATTTTGTTAAATTTCAGCTGGCACTGATTTTTTGGAAGGCTTGGAAAGGCAATTTTATCTGTCCATGTCCCGGCCTTACTCTTTGCAAAATGGAAAGCTTTGCAGAGGCTAACTGCCATATATGAGTTGGTAGAAAAGGGGGTGTTATTTTTCATTAGAATCTGAGGCACTTTTATGATTCTTTATTGGTCTAATCGCGGAGGAATTTTGCCGCCGCCCGAAGTAGCTTTTGAAGCCCCTCTTTAGCAGTGGCTCTGCTGCTCTCAGGAACATGGGGCTCCTGCCATCTAGTAGCTTATGTTATAAGACAGAAAATACAACGATCGGGATCAATGAGTGGGGTCTCAATTTCAGGCTAGCTGCCTAGTCCTATTTTTTTTTTGACAGAAGCCTTCTTTTGTGTTTTTACTTGTCACTCTAATTAAGGAAGAAATCTCTGGTTTTACATATTTTAGTCTGTTAAGAACAAGACCTTTATGTGTAGAGATGACGGAGAAAAATGGCTTCTCGGGGGTGAGGGACACGGAAGCGATGGCGGAGGGCGGCGGGCACCCGTGCGCGCGCTCCGTGCACACTTAGGCTTGGGGTCTGAGTGCGGTGGATCGCCTCTGACTTCTTAAAAAACATAATTAATATATATTTCATTTTTTTCTCTTCCTAG
Seq C2 exon
ATACTACATTAGTAATGAATATAAAGGAATGCCAGGAGGAAGGAATCTTTATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197635:ENST00000360534:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(5.9=100)
A:
NA
C2:
PF0093016=DPPIV_N=FE(4.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development