DreINT0059703 @ danRer10
Intron Retention
Gene
ENSDARG00000079420 | dpp4
Description
dipeptidyl-peptidase 4 [Source:ZFIN;Acc:ZDB-GENE-081104-277]
Coordinates
chr22:11616679-11617524:-
Coord C1 exon
chr22:11617432-11617524
Coord A exon
chr22:11616774-11617431
Coord C2 exon
chr22:11616679-11616773
Length
658 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAA
5' ss Score
7.46
3' ss Seq
CTGCACTATTTCTCCTGCAGATG
3' ss Score
10.64
Exon sequences
Seq C1 exon
AGGATAAAAGTGAGCCTCAGAAGACTTTTACTCTCGAAGATTACTTCAATGGCACAGGAAGAACCAAGTCATATAACATGCGATGGGTTTCAG
Seq A exon
GTATAAACGGCATTTATTTGCATGTTAAATTTAGATTATGGGACTCAGATGATTACTGATTGCAATATAAATAAATATATAATACAAAAATATTTAACATGGCTGTAACTAGGCATGGGACAATAACCGGTTTCAAGGTTTTTAAACTACTAATATTTTCTTTCGTACCATTCCTAAGGTATATGTTTGGTTTTTTATGTGTTTTTTTAAACTAAAGAAGCTGGCAGTTGTCAAGGATTTATTTTAATTATTTAGCCTGACATGTTTACTGTTCCAAAATATTATAAATGTGAATTGTCAATTGAAAAAAAATGTCAAATGAAATGCTGTATATTGTGTTTAATGAGAAAATGTGTTATTTTTTTACTAAGACATTTAAAAAGAACCTAATTTAGAGCTGTGATCACAATACCTTGATATTGTGAAACTGTGATATTTCTGTCCAAGGTTATCATACCCTCACAAACTTATACTGGGCCATGCCTAGCTGTAAAATAAAACTTACATTGATACTTTTTTGGTACATTCTCAAAAGTGCAAATTCATATACTGTTGTCCTTACAAAACACTAGGTACTTTTTGTAAATAAACCTTTGAGAGTGTATATTGACTTGATTTATAATGAAATCAATCATTCGCTGCACTATTTCTCCTGCAG
Seq C2 exon
ATGATGAGTATTTTCACAAAACTGGAGAAGGGTCAGTGTTTCTGTTCAACGCCACCACAGGAAACGGAAATGAATTTGTGAACCAACAGATATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079420:ENSDART00000109596:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATAAAAGTGAGCCTCAGAAGACT
R:
TCTGTTGGTTCACAAATTCATTTCCG
Band lengths:
182-840
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]