HsaINT0061962 @ hg38
Intron Retention
Gene
ENSG00000078098 | FAP
Description
fibroblast activation protein alpha [Source:HGNC Symbol;Acc:HGNC:3590]
Coordinates
chr2:162225483-162226621:-
Coord C1 exon
chr2:162226523-162226621
Coord A exon
chr2:162225578-162226522
Coord C2 exon
chr2:162225483-162225577
Length
945 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GTTTTCTTTCTTGTTTAAAGGAC
3' ss Score
8.83
Exon sequences
Seq C1 exon
TTCATAACTCTGAAGAAAATACAATGAGAGCACTCACACTGAAGGATATTTTAAATGGAACATTTTCTTATAAAACATTTTTTCCAAACTGGATTTCAG
Seq A exon
GTAAGTGCATTATTTATCTTTAGGGGTTTTTTTTATGTATTTTGTTTGGTTTTTATTTTAGTGCCAATACATCTCTATAGTAACTGAAGCCGTATCAGTTGAAATGTACAAAAAGAACAATTATCTGAATGATTCAAGTGCTCAAAAAAGCGCTTTTGACAAAACCATTCATACTGGATTTGCGCCATAGTAATGAGGCCAATAGAGTTTTAAATAGAGAAGGAAAAGTTGAAAATGCATTGTTGAAATAATTTGAACTTCTGTAATCACTTTTGAGAATGGTAGATATATTCCTATTTAGGAGAAGTCACAAAAATTTTACCAAAAGAGAAATTCCATTATTAATCTGGATAATCTGGAAAACAGACAAATCTCAATCTGACAATGAACCCTTTAAGGGTCATGAAATCGGTATTTTCATACAGCTTTTCAAAATAGGATGTTATAAAGCAAATCTAATCAAATAAATAGTGAGATCAACTAAATAGTCTATGACATTTTAGTTGAGTATCTTAAGTGTCACTGAACAAAATGGAATATTTTAATTTTTTCTCTTTAGAAAATAAAATTAATACAAAGTGAGTTTTAAGTTGAACCAAACACAACTTAAATGTAATTTATGTTTATTACTGCAAAAGAAATATACACTTCAAACTAGTTTATCCCCTTTGTAACCCAGAGAAAACAAAATTGTGTTCCTAAGCACCCTGAATCGGCTAAAATAGGGCTGCTGTTTGCAAATGTGGCATCTTTGTGTGAAGTAGAACAAAGCATTCTACCTTCTTCCTCTACCACCAACTTACTATTTTACATATCACAAAGCAATATGTACTGGACAGAGAGGAAAAACAAAGTAGGTCTGTGAAATAGAGAGGTTTCTTTTGTTAGGAATGTATTTCATGTTAAGAGAGATCATTTACATTTTGTTTTCTTTCTTGTTTAAAG
Seq C2 exon
GACAAGAATATCTTCATCAATCTGCAGATAACAATATAGTACTTTATAATATTGAAACAGGACAATCATATACCATTTTGAGTAATAGAACCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078098:ENST00000188790:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0093016=DPPIV_N=PU(3.5=40.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development