GgaINT0046610 @ galGal3
Intron Retention
Gene
ENSGALG00000011099 | FAP
Description
NA
Coordinates
chr7:22648688-22650787:+
Coord C1 exon
chr7:22648688-22648783
Coord A exon
chr7:22648784-22650692
Coord C2 exon
chr7:22650693-22650787
Length
1909 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CATTTATCTTGTTTTTTAAGATA
3' ss Score
8.07
Exon sequences
Seq C1 exon
TTGTCACCACAGTTGATGGTCCTAGAGCTCTTACACTGGATGATTACTTGAATGGAAATTTTCAATATAAAACATATTTTCCATACTGGGTGTCAG
Seq A exon
GTAGGTAAATTTTTTTTTATCTGAGGTACATAAGCATTTTTAATATGTGTTTTCTGATGCATACTAAGAAATATACTTTTCTTCCAGCTTTACTCCGAATAAATGCAAACTATAAAATTAAACAATTTATTAGTCAAAACTCAAGATTAAATTTACACTTCTGTCAGGGATTCTAGAAATTCCTAGTATTCAATGTTGCAACAGAAATGTTTGAGTTAAGCATAAACTATCATTTTACAAAGGCTTTTAATGCTGTATTTCTTTTACTGTCATACTTAATAGAGCATGGTAAAGAAATTTATCAATGTGTCAGTCATGTTTTAAAGAATGTCCCTTTTTTGTGTTTGTAACGGCATTTCTTCACCTGCTATAAATTATAATTGAGGTAGCCTGTATTACAGGCCTTGTTTTTGTTTTCTGTAATACTTAGTGCTGTAGAAAGCCAACCTGTTCTTATCTCTTATATATGGAAATACGAACACTGCTAAAATTTTGAGTTCCAAGGCAATGCACAGAAAGTAAGGATGAGTTTCTTAGCAAGATCCTTAACACAGGAGATAAAGACACAAAGTTAATTGCTGCTGATGTATGTGTCAATGTCTGTCCAAAATACTACTCTTGTTATCACTGAACTGCAGCAGCACCAGAAGGTTTAAGCTAGATTGGATTACATTCTAGTACTTGCAGTACTACCACTCATATCTGTGCATTGCCTCAAGCAGTTATTATTTTATCAGTAGAGGCAAGAAACAAAATTCCCATTCACATGGGGTCTTATCAAGTTAGTTTAAACCCACAATTTTAGAACTGAACTGAAGCCCTCCAGGACACTGCTAGCAGCAGTTCTAGTTTCACAGTTAGCAATTTGAAGTATGTAGACATGACTTACGTGATTTAAAAATTAGGTCACCATTTGTTAGAATTCTGTATGAATGTCTGAAGTATGTAGGCAGCATATCACCTAAACCTGATATTCACATTCTCTCTTCATAACTTCCTCACTTAGACTTATCTTTCATCTTAACAGTCACAAAACTCACACAAAAGTCATGCCATAGATTCCATAGATAGTCATGCCTACAGCATTCCATATGCCCACTTTTCTTCTGAAGCAGGGAGCTGAGATTGAATAACTTTTTTAAAAGGGCCTGAGATCACCACAAATGCTTTTACTGAAATCATGTTAAGTGTTTTCTGAATGTCCAAGAGTGATCTAGTTTCCTCCCTAATGAAAACCTTATAGAATGTTTCAGGCTGCTTTTAAATTGTTAAAGTCTCTCTCTCTTAAGCTACATCAAGTGTGCAATTCCTTATCTCTATTTATAGCAAAATTATGATGTGAAATTAGAATTCTCATCTTCTTGTCCTACCAAACTGTGGCTCATATCTTGAACACAGGTAAGATTAAATTCAGTTCTCACTGGAGGCCACTCACCTTCATTATGTAGGATCATGGCATGTGAGTAAGGGCAGAGTAATTTACGTACAGTTACATGATACTACTGTTACATCTACAAGCTGTAAAAATGAGAATATTCTGGTGAAATTATAAGCAATGATGTTGAATGTTTTCATAATAGCTTTTATATTGTGATACTGGCATATAATGGATCTGTCCCTCTTATTCTTAATCATGTACTACTGAGAATAAAATCTGGCATTTAATAATGAAACTAACTAGCTGGTTCTGCATGTAATATATGATCTTGAGAAAATAATTAAGAAACCTTCTGACTATTATAACTTGGCATCATTAGAAGAAAACTTTTTCTGCGTGTGTGTTTGTAGATGCTTAAAGAGACTTGCTCAAAATCTATTTACTGACAAAGGTAATAAAAACTTTGGTAAAAAGATCTGTTCTATGTTATCTTCTTTGCAAGGTAACAACCCATTTATCTTGTTTTTTAAG
Seq C2 exon
ATAGTGAATATCTTCACCAGAATCAAGAAGATGATATTATTCTTTTCAATGTTGACATGAACTACCTAACTACCATCATGACCAACAGCACAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011099:ENSGALT00000018083:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCACCACAGTTGATGGTCC
R:
CATTGTGCTGTTGGTCATGATGG
Band lengths:
190-2099
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]