DreINT0059705 @ danRer10
Intron Retention
Gene
ENSDARG00000079420 | dpp4
Description
dipeptidyl-peptidase 4 [Source:ZFIN;Acc:ZDB-GENE-081104-277]
Coordinates
chr22:11615168-11615384:-
Coord C1 exon
chr22:11615310-11615384
Coord A exon
chr22:11615221-11615309
Coord C2 exon
chr22:11615168-11615220
Length
89 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATC
5' ss Score
7.46
3' ss Seq
GACGACTGTCTCTTTAACAGCTA
3' ss Score
8.07
Exon sequences
Seq C1 exon
GCCCGTGTGGCAGCGTTTGATTATCTGGTGTCAGCCGATCGAAAATACGTCTGCTTTCTGAGCAACTACACTAAG
Seq A exon
GTAATCAATAAAATGCTTTGATGCTTAATCAATCATTAATAATCTGATGCTGTCCTCTAAATGTTTAATGACGACTGTCTCTTTAACAG
Seq C2 exon
CTATGGAGACACACATACACTGCATCATATTCCATCTATGACCTGGAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079420:ENSDART00000109596:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=PU(3.9=56.0)
A:
NA
C2:
PF0093016=DPPIV_N=FE(4.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGTGGCAGCGTTTGATTA
R:
CCAGGTCATAGATGGAATATGATGCA
Band lengths:
119-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]