GgaINT0046612 @ galGal4
Intron Retention
Gene
ENSGALG00000011099 | FAP
Description
seprase [Source:RefSeq peptide;Acc:NP_001180568]
Coordinates
chr7:20585697-20586006:+
Coord C1 exon
chr7:20585697-20585771
Coord A exon
chr7:20585772-20585953
Coord C2 exon
chr7:20585954-20586006
Length
182 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
TTCTTGCTTAATTTTTGCAGCTG
3' ss Score
7.16
Exon sequences
Seq C1 exon
AAACAGGTTAATGCTTCAAATTATGTGATGTCATCAGACAAATACTTCATAGCTCTGGAGAGCAATTATTCAAAG
Seq A exon
GTAATTATTTTATATATTGCTTAATGAAATGTTTGATATCATTCAGTGTTTGTGGTTACTATGCATAATTTTTTTTCAGCCTTTTCTTGAGTAAAGTGAAAGGCTGTGAAAGTCATCTGATGATTTTTACTTAAATCATCTTTTTTTCCAATTTAATATCTTTTCTTGCTTAATTTTTGCAG
Seq C2 exon
CTGTGGAGATATTCTTATACTGCATCATACCACATTTATGATCTCATATATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011099:ENSGALT00000018083:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=PU(3.8=56.0)
A:
NA
C2:
PF0093016=DPPIV_N=FE(4.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGTTAATGCTTCAAATTATGTGA
R:
TGAGATCATAAATGTGGTATGATGCA
Band lengths:
119-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]