DreINT0059756 @ danRer10
Intron Retention
Gene
ENSDARG00000027750 | dpp7
Description
dipeptidyl-peptidase 7 [Source:ZFIN;Acc:ZDB-GENE-050306-16]
Coordinates
chr5:28573933-28576372:+
Coord C1 exon
chr5:28573933-28574089
Coord A exon
chr5:28574090-28576307
Coord C2 exon
chr5:28576308-28576372
Length
2218 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
ATTTAAATGTTTTGCTCTAGATC
3' ss Score
8.97
Exon sequences
Seq C1 exon
GCCTGCACCGAGATCGAGATGTGCTTTGAGAGCAACAATGTGACAGACATGTTTCCGGCCATGCCGTTCACTGAGCAGCAGAGGGAGCAGTACTGCTCAAACAGATGGGGAGTTGTGCCACGGCCAGGGTGGCTGAAGACACAGTTCTGGGGCAATG
Seq A exon
GTAAGCTCTGCTGGGATACTTTACTTTTCTTTTAGACACACACACTAGCAAACTTTCCTGAGTGCCTCCTCAGAGGAAACCTGCTGCCATTTCAAGTTTGTTCCGCTTTGGAAAGTGGATGAGTAGTGTTTATACGTCACCCTGGACCATAAAACCATATAAGATGTGAATAAAATAACTATCCCCTGGTAAGATAGGACAGTATTTGGCATACAGCTATATGAAAATCTGAAATAGTAGAAAAATCACCTTTTTAGCAGTCTAAATGAAGTCCTTAGCAATGCATATTACTAATCAAGCATTGAGTTGATTTATTTACATTAGGACATTTAGAATATATCCTCATGGAACATGATCTTTACTTAATATACCTAAAAAAATTGCCATAAAAGAAAAAATCCACAGTTTTGACCCATACATTGTAGTTTTGGCTATTGCCAAGTGGTGCATTAGGAAGAAGGACAAGAACCAACAAACTTTCAATATTGATATTAAATAAACAAAAAAAATAAATAAATAAACGCAAAACAAGAAAGCTTTGGCAGTCCCTCATAGAAACAACTGCCGAACTGAAAGCACATCAAACAAACTCCAAGCCTGGGGTCCATTCTTCTTACGATTTAATTATTGACAATTTGACATGATCCAGGATCGTTTCGCTCTTCAAAACTCATCTGAGAGTTGTTGTCATAGCAACAGTTCTGGTAGTTCAAACCTGCTCAGGAGCAGGCTTATTTCATATAAACAGGATTAGATCGAGTCAGTTCAAGCTAAGGTAATCCTAACAGTACATACCAAATGCTGATATTTACTTAGAGTAGTTATATACACTAGGAAAAATTGTAAAATTGATTTTTAAAAATTAAATAAACAAATCTTATGCAATCTGCACTCCAAATAAAAGTACAAAGACATGGGGTGGTTCTCCCCAAGGGGTTTAATAAGAATATTTATTGTTACTTTTTAAATACAAACATACTATTTAAGGTACCAGCTTTTGTACAATTTGTGTATGATAATAGACAAGCACAATATTCGACTTTTAAATTTAATAATTTGTGCAGTTATGCACGTTTTAACAGATAATATGCTGGTGATATGATGCTTCGCAAAAGTTGCAGACACCTTTACCGATATCAAAATGCTTTTTTAATGTAAAATTAATTTAAATAGCCAGTTATTCTTTACGCCGATTAAGAAACTTGAATATGCCTATAGGCTACTATAAAGAAAATCCGCTCTAAAACATAAAACTAAAAAAAATAGCTATAAAAAAAGTTTATAGCCTGCAGCCCAGAAAAAAGATGGAAAGTTATTGCGTATCATATTTAACAAACCATAAAGTACGAGATTTATCTAATTTTGCTCACATGGATAACTTAATATTAATCATATGATGTCATTACGCTGCAATGCCGTCATCCAAACGCTGCATTGCTGATCATGATTTCGAGGATCGACAGATCTGCCCTTCAAAACACATGCAGATCAGATCATCCAGACGTAATCTGATTCAAGAACTTGTTTGAAGAATCAAATTAACCAGAGATCAGTTATTAAGATTAAAAGATTCAGGATGTGCCAAATCATCTTAGATCATTTAAGTGAGGTACGAAGAACGGACCCCGTGTCCTCAATCATCTTCCAAAGAGCTCCTTTGTGAGACCCGAGACAGTTGGCGCACACAGGTGACAGTAGTTAACAACCTCATACTGCTCTCAGTCCGTCCTACTCGCTTCAATAATATTAGAACAAAAATGTTTATATGTCTTGATTTCGATCAAGGCAGCAAGTCTATTTATATGTACACTTCAGGCTTCTCCCTATACCAAAATACAAGACAACTGTGATGTCAGCACCTATCTGATACAATTTACCCCCACTTTTAAACTCTATATTTCTTTTTTTAAACATAAAATGACAAGTGCACATATAGACATATGGAATCAAACAGATTTGCAGGGAAAAACATAAAAAAAACAATCATCTCAAGTATAATCAATGATAAACATCTAAATCAAGATAGAAGGAAGGACATATAAAACAAGTGAAACACAGCCAAGCTGTTTGGGTTTGTCACTTTAAAAAAACATAAGAAAAGGCTTTACCTCATGATTATGCAACACGTTCCACTCTTCTTTGATCCTTTACATATTCATTGGGTGTTTGCAGTGTAACTGGAGCTAAATCTGGCATCCATTTAAATGTTTTGCTCTAG
Seq C2 exon
ATCTCTCCACCGCAAGCAATATCATCTTCTCCAATGGTGATCTTGATCCTTGGGCTAATGGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027750:ENSDART00000037891:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(12.1=100)
A:
NA
C2:
PF055777=Peptidase_S28=FE(4.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]