GgaINT0126633 @ galGal3
Intron Retention
Gene
ENSGALG00000009105 | DPP7
Description
NA
Coordinates
chr17:705623-706043:+
Coord C1 exon
chr17:705623-705779
Coord A exon
chr17:705780-705978
Coord C2 exon
chr17:705979-706043
Length
199 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
3' ss Seq
GTGTCACCTTTGTATTTCAGACC
3' ss Score
8.73
Exon sequences
Seq C1 exon
GTGTGTACCGAGATCAACTTAACTTTCAACAGCAACAACGTGACAGACATGTTCCCTGAGATGCCCTTCACAGAGGCCATGAGAGAGCAGTACTGTTGGAGCCGATGGCGCGTGAGGCCGCGAGCGCAGTGGCTGCGGATCAACTTCTGGGGAGGAG
Seq A exon
GTGTGTCTGCCACAGAGGTGCTGCCTGCTCGGCCCTCTGTGCAGTTCTCTCCCTGACCTCCACCCGGCTGGGCTTTGTGGGGACAGACACAGCTTGAGGTGGAGATAGGAAGTTCTTATCTATGTTTGCTGTTACTGTCTGTGTTTGCTGCGGTTGCTGGGCAGGGAGAAGGCTCTCACGTGTCACCTTTGTATTTCAG
Seq C2 exon
ACCTGAAAAGTGCAAGCAACATCATCTTTTCAAATGGAGACTTGGACCCGTGGGCTGGAGGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009105:ENSGALT00000014829:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(12.1=100)
A:
NA
C2:
PF055777=Peptidase_S28=FE(4.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGTACCGAGATCAACTTAACT
R:
CCACGGGTCCAAGTCTCCATT
Band lengths:
210-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]