DreINT0062413 @ danRer10
Intron Retention
Gene
ENSDARG00000056744 | ela2
Description
elastase 2 [Source:ZFIN;Acc:ZDB-GENE-041117-1]
Coordinates
chr8:21348774-21349462:+
Coord C1 exon
chr8:21348774-21348919
Coord A exon
chr8:21348920-21349309
Coord C2 exon
chr8:21349310-21349462
Length
390 bp
Sequences
Splice sites
5' ss Seq
AATGTGGGT
5' ss Score
2.76
3' ss Seq
ATATAACCTGACTGCTGCAGGGT
3' ss Score
4.1
Exon sequences
Seq C1 exon
CCGGTGGTCCCATTGCTGATATCCTGCAGCAGGCTCTGCTCCCTATTGTGGATCAAGCTACCTGCACTAAATCTGACTGGTGGGGCAACCTCGTGACCGACCTCATGGTGTGCGCTGGTGGAGATGGAGTTGTGTCCAGCTGCAAT
Seq A exon
GTGGGTTTGATGTGCACTTACATTTACATTTTCATAGACTTTCATAGACTTATGAAACTGAGTGTTCTCTGATTCAACAAGAAGAGGCAATACACACAAGAAATACTAATTTTACGAATTAACTGTGCTCAGAGAACTAAGTGATAGAGTTGAGGGTTGAGAGTTATTTTAGTATTTTTAGTATTAAGTGATTTTTAAGAACATGACTGGTGCAAATGTAGGTAAAAGTGTCAGAAAGATTAAAAAAAGTGTTTTTACTACAGGTGGTTTGTCAAGCCCACTCACCTGTGTGAAGCACACTCAGAATTGATAATGTTTTAGGTTGTTGTGTGGTTTTTATCCTTGATGTATTTGAAAATGCACCCTAAAAATATAACCTGACTGCTGCAG
Seq C2 exon
GGTGATTCTGGTGGCCCTCTGAACTGCCAGAGACGTGACGGCACCTGGGATGTTCACGGCATTGTGAGTTTTGGCTCCAGCTTGGGCTGCAACTACCCCAAGAAACCCTCCGTCTTCACCCGTGTGTCTGGATACATTCCCTGGATCAACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056744:ENSDART00000136765:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.7=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.7=94.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGGTCCCATTGCTGATAT
R:
GAATGTATCCAGACACACGGGT
Band lengths:
284-674
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]