DreINT0062423 @ danRer10
Intron Retention
Gene
ENSDARG00000007276 | ela3l
Description
elastase 3 like [Source:ZFIN;Acc:ZDB-GENE-060710-2]
Coordinates
chr5:25513764-25514133:-
Coord C1 exon
chr5:25513997-25514133
Coord A exon
chr5:25513910-25513996
Coord C2 exon
chr5:25513764-25513909
Length
87 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
ATACTTTGGTTTTGTCCCAGCTG
3' ss Score
5.93
Exon sequences
Seq C1 exon
AAACGACATTGCCCTGATCAAGTTGGCTGAGCCTGTGACACTGAGTGATACTATTCAGTTGGGCTGTGTTCCTGCTCCTGGCGATGTCCTCCCAAACAACTACCCTTGCTATATTTCAGGCTGGGGAAGACTCTCCA
Seq A exon
GTGAGTACTCCTGCACACAAAACCTGACACATCATGCACATAATATTAGTACACTGTATTAACCAACATACTTTGGTTTTGTCCCAG
Seq C2 exon
CTGGTGGTGCTCTTCCTGACAGACTTCAGCAGGCTCTGATGCCCGCTGTGGATCACGCCACCTGCTCCAGGTTTGACTGGTGGGGCTCCAGTGTCAAGGAGACCATGGTCTGCGCTGGTGGAGATGGTGTTGTCGCTGGATGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007276:ENSDART00000009028:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.7=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCCTGATCAAGTTGGCTG
R:
TCAGAGCCTGCTGAAGTCTGT
Band lengths:
168-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]