GgaINT0134355 @ galGal3
Intron Retention
Gene
ENSGALG00000013701 | F1P457_CHICK
Description
NA
Coordinates
chr21:4995319-4995676:-
Coord C1 exon
chr21:4995540-4995676
Coord A exon
chr21:4995465-4995539
Coord C2 exon
chr21:4995319-4995464
Length
75 bp
Sequences
Splice sites
5' ss Seq
GGAGTAAGC
5' ss Score
5.07
3' ss Seq
ACTTGAGGCTGTCTTTGCAGCCA
3' ss Score
4.96
Exon sequences
Seq C1 exon
CAATGACATTGCTTTGATCAAGTTGACGGAACCAGTGCAGGAGAGTGACACCATCCAGGCTGCCTGCCTGCCGCCCAGCGGGCTGGAGCTGGAGAATGACTACCCTTGCGAGATCACTGGCTGGGGACGCCTCTGGA
Seq A exon
GTAAGCAGGGTGACCACAGAGGGAACTGAAAGGGTCAGAATTGGATATGGGTGCAACTTGAGGCTGTCTTTGCAG
Seq C2 exon
CCAACGGGCCGCTGGCGGAGGTCCTGCAGCAGGCCCTGCTGCCCGTGGTGGACTACGCAACGTGCTCACAGAGCGACTGGTGGGGCGGCCTGGTGAGGACCTCCATGGTCTGCGCTGGTGGTGACGGTGTCGTCTCAGGATGCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013701:ENSGALT00000022280:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(24.2=100)
A:
NA
C2:
PF0008921=Trypsin=FE(25.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCGAGATCACTGGCTGG
R:
GTTGCATCCTGAGACGACACC
Band lengths:
179-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]