RnoINT0043259 @ rn6
Intron Retention
Gene
ENSRNOG00000013745 | Ctrc
Description
chymotrypsin C [Source:RGD Symbol;Acc:1308379]
Coordinates
chr5:160397182-160398476:-
Coord C1 exon
chr5:160398340-160398476
Coord A exon
chr5:160397328-160398339
Coord C2 exon
chr5:160397182-160397327
Length
1012 bp
Sequences
Splice sites
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
3' ss Seq
CATGGCTACTCTCTCCTCAGCCA
3' ss Score
7.12
Exon sequences
Seq C1 exon
GAACGACATCGCTATCATTAAGTTGGCTGAGCCTGTGGAACTGAGCAACACCATCCAGGTGGCCTGCATCCCAGAGGAAGGTTCCCTGCTGCCTCAGGACTATCCCTGCTATGTCACGGGCTGGGGTCGCCTCTGGA
Seq A exon
GTGAGTACAGCCTGCACTAGAAAATCCCCGAGGCTTTCTGGAGGAGGTGCCACTGTCGATCCCACGTTCTCCCTCCCGACTGATGTTTTTGTAGACTTTTTAAACCTTTGTGATAATAACAACTGCTATGTATTACTTAGCCCAGACCCATGGGACAAGCACATCACAAGTAAACGTGTGTGTGGCTAGAACTCATCGGGCGTTTAGAACAGGGACTGCCTCATTGCCCCAGCCGTAGAAATGGGGTAAAAACGAAAGGCTGGCCTATGATCCAGAACTTGGAAAGTGGAAGCTGGAGAATCAGGAGTTCAAGGTTACTACACAGGGGATTTGAGGACAACCTAAGCTACATGAGAACCTGCATCAAAATAATTAAACTAACTAACTACTAACTAGCTAGCTAGCTAGCTAGCTAACTAACTAACTAAAACTGCCCCTTAGGGGTAGGAGGCTAGATCTCATAGCAGACAGACGCCCATGAAGATGCCAGCTTAACTAGATGGTTAAGTGAGACTATCGAGATTGGAGAAAGCAGAGGTTAGCTCTTAGGACCTCCTGTGCGAGGAAAGCCTTTAGATGTGTCCCCTAAAGATGGAGTGAGGGAAGCCCCTAAGACCTCAGCTGAGGCCGAAGGGTCACAAGTCAACCTGCCCCAGGTCAGAGTGAATCGGAGGCCAGCCTAGGCAGCGCGGGAGACCCTGTCACAAAATACAAAGTTAAGGGAAAGCTAGGGGTATAGTGCAGTGGTAGCATGCATGTCCAGCATCCTCAGAAGCCTGGGTTTGATCCTGACCACGGCAAAATAGGAAGGGGAAGCAAAATTAAGACTCCAAACTAGAGGCCCATAATCCCCAAGGGACTGTGACCCAAAGACCTGAGCCATCCCAGGGAAGGGCACACCCGTGGTTCCCACAGCCTTCCATACACTCTCGGTGTCCTGCTGGCTGGAGGCCAGAGCTAGGGCTGAGCCGAGGACATGGGCTGACTCCCTGCATGGCTACTCTCTCCTCAG
Seq C2 exon
CCAATGGTCCCATCGCTGAAGTGCTCCAGCAGGGCCTGCAGCCCATCGTGAGCCATGCCACGTGCTCCAGGTTGGACTGGTGGTTCATCAAGGTCCGGAAGACGATGGTGTGCGCTGGGGGTGATGGCGTCATCTCTGCCTGTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013745:ENSRNOT00000018393:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.7=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACATCGCTATCATTAAGTTGGC
R:
GTTACAGGCAGAGATGACGCC
Band lengths:
280-1292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]