DreINT0062424 @ danRer10
Intron Retention
Gene
ENSDARG00000007276 | ela3l
Description
elastase 3 like [Source:ZFIN;Acc:ZDB-GENE-060710-2]
Coordinates
chr5:25512512-25513909:-
Coord C1 exon
chr5:25513764-25513909
Coord A exon
chr5:25512665-25513763
Coord C2 exon
chr5:25512512-25512664
Length
1099 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
TTTTTGTAAACCTTCAACAGGGA
3' ss Score
6.03
Exon sequences
Seq C1 exon
CTGGTGGTGCTCTTCCTGACAGACTTCAGCAGGCTCTGATGCCCGCTGTGGATCACGCCACCTGCTCCAGGTTTGACTGGTGGGGCTCCAGTGTCAAGGAGACCATGGTCTGCGCTGGTGGAGATGGTGTTGTCGCTGGATGCAAT
Seq A exon
GTGAGTAAAGCTATTCCTTATGAGGTCATTTATTAATTGTCATGTGCATCTTTATTTGTGAGGCATCTATTAGTTTAGAAAGAAACTTTAAGCAACTTCTTTATGGAAACTCATTAAGAGAGAACAATGTTCTAAATATTGAGAGGCAAATTGTATATGCTTTTTTAAGAAAATGTGAACAGCTGATGATGAGTATATTTTAGATACAATATTATATTTGTACAATACAATATTATAATATAATTGTGAAGACAGCAGTCATTTGAGTCTATAAATTGGCTAAATCAAATATGCCCCATGAGTTGTTAAAAGGGATAGTTCACCCAAAAATGAAATTGTACTCACGAATTACTCACCCTCAAATAGTTTTAAAGCTTTATGAGTGCCATTCTTCTGTTGAACATAAAATAAAATATTCTGAAGAAAACTGGAAACCAGTAACCATTGACTTTTATAATAGGAAATATAGATTCCATGAAAGTAAATGGTTACTGTTGATGTAAATCCAAAAACATTTTGATTGCCCCCTAGTGGCTACTGAAAAATTCAGTAGCTCTTATCATGCTATGTTATGTTTAAATGTTCACTATTCCAGTAACTTTGCTTTTAGTTTGTTATTTGATGCAACTCACAATGAAGTAAGCTCTTTTCTGCAATAAATAACAAAGTAAACAGTCAAACTACCTGCTCTTTAAAAAGGTGTGTATATATTGACAATGATAATATAATATAATATAATATAATATAATATAATATAATATGATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAAAATAAAAAAATGAAATCAGCTTGCTACGTGGTGACAGTGACCATACATGGGATGTTTTGTCTCCCTTTTTAAGCAGCGGAAGGAAGTGGAAACACATTAGCCATCTTTTTTACAATGTTAACCAGTTGGAATAGCACTCAAGAAGCCCAATTCAAGTCAATTTTAAAAGTCTAATTCAAATAAAATATCTATTTTGTTCAGTGTCAATAACTTTTTGTAAACCTTCAACAG
Seq C2 exon
GGAGACTCCGGCGGTCCTCTGAACTGCAAGAACTCTGACGGCATCTGGGAGGTCCACGGTATTGCCAGCTTTGTGTCTGGTTTGGGCTGTAACACTATTAGGAAGCCTACTGTTTTCACCCGCGTGTCTTCTTTCACTGACTGGGTTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007276:ENSDART00000009028:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.5=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.5=94.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGCTCTTCCTGACAGAC
R:
TGTCAACCCAGTCAGTGAAAGA
Band lengths:
294-1393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]