DreINT0063212 @ danRer10
Intron Retention
Gene
ENSDARG00000033953 | entpd2a.2
Description
ectonucleoside triphosphate diphosphohydrolase 2a, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-040724-67]
Coordinates
chr5:28967128-28967630:-
Coord C1 exon
chr5:28967480-28967630
Coord A exon
chr5:28967288-28967479
Coord C2 exon
chr5:28967128-28967287
Length
192 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
CAGATAATATTTTTGCACAGTAT
3' ss Score
2.78
Exon sequences
Seq C1 exon
GAGGAGGGATATCCAGTTATGCTGGAATCAAAGGAGCAGCAGCACGTAGCCTTGAGGAATGCATGGATAAAGCCACTAAAAGCATCCCGAAATCTAGACAGAGGATTACCCCCGTGTATCTGGGGGCCACTGCAGGCATGAGGCTACTGAA
Seq A exon
GTGAGTCTGAACACGGTTCAAATGATGAATGCACACTGATGCGTTGATCATTATATAACCTTTCCCAATATCTGCACTGCATTTTATGACATACAAACTGTAAATCGTAAAGACTCTTCACTTCACATGTTCATCCACAGTATCAGTGCACTAAATAGGGTGGAATTAATCGCAGATAATATTTTTGCACAG
Seq C2 exon
TATTTCTAAACCCAAAGAGTCGGCTGAGGTCTTAAAAGAAGTTGGAGAAAAACTGAAGAGCTATCCGTTCAGCTTTAAAGGAGCCTCTATCTTAACTGGACAAGATGAGGGAGCTTATGGATGGATCACAGTCAACTACCTGCTGGAGAATTTTATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033953:ENSDART00000043259:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(11.7=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(12.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATCAAAGGAGCAGCAGCA
R:
AGCTCCCTCATCTTGTCCAGT
Band lengths:
243-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]