MmuINT0057672 @ mm10
Intron Retention
Gene
ENSMUSG00000015085 | Entpd2
Description
ectonucleoside triphosphate diphosphohydrolase 2 [Source:MGI Symbol;Acc:MGI:1096863]
Coordinates
chr2:25398001-25398450:+
Coord C1 exon
chr2:25398001-25398151
Coord A exon
chr2:25398152-25398290
Coord C2 exon
chr2:25398291-25398450
Length
139 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
CCCCCTCCCCCATTCCACAGCCT
3' ss Score
10.35
Exon sequences
Seq C1 exon
GTGGTGGCATCTCCAGCTACGCAAATGACCCTTCTAGGGCAGGCCAGAGTCTGGTTGAATGTCTTGAACAGGCACTTCGGGATGTGCCCAAAGACAGATATGCCAGCACTCCACTCTACCTGGGAGCTACAGCAGGCATGCGCCTACTCAA
Seq A exon
GTGAGTGCTTATACCCAGGGGCCTGCACAGCTCTTCAGCAGAGTAGAACTCTCCTCCCAGAGCAAGCTCTCAGGAGGGCAAGCCTGGCAGAGGGCACCTGGGATGAGCTCCATCAGAGTCCCCCTCCCCCATTCCACAG
Seq C2 exon
CCTGACCAGCCCAGAGGCCACAGCCAAGGTGCTGGAGGCAGTGACACAGACGCTCACACGGTACCCCTTTGACTTCCGTGGTGCCCGCATCCTCTCGGGACAGGATGAAGGGGTGTTTGGCTGGGTGACTGCCAACTACCTGCTGGAGAACTTCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015085:ENSMUST00000028328:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(11.7=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(12.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCTACGCAAATGACCCTT
R:
CCCTTCATCCTGTCCCGAGAG
Band lengths:
251-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types