MmuEX1009506 @ mm10
Exon Skipping
Gene
ENSMUSG00000015085 | Entpd2
Description
ectonucleoside triphosphate diphosphohydrolase 2 [Source:MGI Symbol;Acc:MGI:1096863]
Coordinates
chr2:25397396-25398450:+
Coord C1 exon
chr2:25397396-25397513
Coord A exon
chr2:25398001-25398151
Coord C2 exon
chr2:25398291-25398450
Length
151 bp
Sequences
Splice sites
3' ss Seq
CAACTCCTTGTTCTCTCTAGGTG
3' ss Score
10.67
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
TATGGCATCGTTCTGGATGCTGGCTCTTCACACACATCCATGTTTGTCTACAAGTGGCCAGCGGACAAGGAAAATGACACAGGTATCGTGGGCCAGCACAGCTCTTGCGATGTTCGAG
Seq A exon
GTGGTGGCATCTCCAGCTACGCAAATGACCCTTCTAGGGCAGGCCAGAGTCTGGTTGAATGTCTTGAACAGGCACTTCGGGATGTGCCCAAAGACAGATATGCCAGCACTCCACTCTACCTGGGAGCTACAGCAGGCATGCGCCTACTCAA
Seq C2 exon
CCTGACCAGCCCAGAGGCCACAGCCAAGGTGCTGGAGGCAGTGACACAGACGCTCACACGGTACCCCTTTGACTTCCGTGGTGCCCGCATCCTCTCGGGACAGGATGAAGGGGTGTTTGGCTGGGTGACTGCCAACTACCTGCTGGAGAACTTCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015085-'4-2,'4-1,5-2
Average complexity
S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(9.1=100)
A:
PF0115012=GDA1_CD39=FE(11.7=100)
C2:
PF0115012=GDA1_CD39=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGCTCTTCACACACATC
R:
CAGCAGGTAGTTGGCAGTCAC
Band lengths:
246-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types