GgaEX6014653 @ galGal3
Exon Skipping
Gene
ENSGALG00000009058 | F1NGR8_CHICK
Description
NA
Coordinates
chr17:789044-789967:+
Coord C1 exon
chr17:789044-789161
Coord A exon
chr17:789532-789682
Coord C2 exon
chr17:789808-789967
Length
151 bp
Sequences
Splice sites
3' ss Seq
TGCAGTTTCCCTCTCCGCAGGTC
3' ss Score
10.99
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TATCGCATCGTCTTAGTCGCCGGATCCTCCCACACGTCCGTGTTCATCTACAAGTGGAGAAGGGACAAGGAGAAGGACATTGGGGTGGTCAGCGAACACAGCATTTGTGACGTGGAGG
Seq A exon
GTCCTGGCATCTCCAGCTACAGCTCCAAACCTCCGGCTGCTGGGAAGAGCTTAGAGCACTGCCTGAGCCAGGCTATGAGAGATGTGCCCAAGGAGAAGCACGCAGACACTCCGCTCTACCTGGGTGCCACAGCTGGCATGCGCCTGCTCAG
Seq C2 exon
AATTGCAGACCCACCGTCCTCAGACGCTGTCCTCAGTGCAGTGATGGCCACACTGAAGTCGTACCCCTTTGATTTCCGGGGAGCAAAGATCCTGTCAGGGGAAGAGGAGGGGGTGTTTGGCTGGATCACGGCAAACTACCTCCTGGAGAACTTCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009058-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(9.0=100)
A:
PF0115012=GDA1_CD39=FE(11.5=100)
C2:
PF0115012=GDA1_CD39=FE(12.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGTCTTAGTCGCCGGATC
R:
GGAGGTAGTTTGCCGTGATCC
Band lengths:
256-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]