GgaEX6014653 @ galGal4
Exon Skipping
Gene
ENSGALG00000009058 | ENTPD2
Description
ectonucleoside triphosphate diphosphohydrolase 2 precursor [Source:RefSeq peptide;Acc:NP_990285]
Coordinates
chr17:405749-406672:+
Coord C1 exon
chr17:405749-405866
Coord A exon
chr17:406237-406387
Coord C2 exon
chr17:406513-406672
Length
151 bp
Sequences
Splice sites
3' ss Seq
TGCAGTTTCCCTCTCCGCAGGTC
3' ss Score
10.99
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TACGGCATCGTGCTGGACGCCGGATCCTCCCACACGGCCGTGTTCATCTACAAGTGGCCCGCGGACAAGGAGAACGACACTGGGGTGGTCAGCGAGCACAGCATGTGCGACGTGGAGG
Seq A exon
GTCCTGGCATCTCCAGCTACAGCTCCAAACCTCCGGCTGCTGGGAAGAGCTTAGAGCACTGCCTGAGCCAGGCTATGAGAGATGTGCCCAAGGAGAAGCACGCAGACACTCCGCTCTACCTGGGTGCCACAGCTGGCATGCGCCTGCTCAG
Seq C2 exon
AATTGCAGACCCACCGTCCTCAGACGCTGTCCTCAGTGCAGTGATGGCCACACTGAAGTCGTACCCCTTTGATTTCCGGGGAGCAAAGATCCTGTCAGGGGAAGAGGAGGGGGTGTTTGGCTGGATCACGGCAAACTACCTCCTGGAGAACTTCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009058-'2-5,'2-4,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(9.0=100)
A:
PF0115012=GDA1_CD39=FE(11.5=100)
C2:
PF0115012=GDA1_CD39=FE(12.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGGCCGTGTTCATCTACAA
R:
TGATGAAGTTCTCCAGGAGGT
Band lengths:
244-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]