DreINT0063214 @ danRer10
Intron Retention
Gene
ENSDARG00000033953 | entpd2a.2
Description
ectonucleoside triphosphate diphosphohydrolase 2a, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-040724-67]
Coordinates
chr5:28966441-28967026:-
Coord C1 exon
chr5:28966799-28967026
Coord A exon
chr5:28966705-28966798
Coord C2 exon
chr5:28966441-28966704
Length
94 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAAG
5' ss Score
3.39
3' ss Seq
TTTCTTTATGCATGTTACAGACT
3' ss Score
6.45
Exon sequences
Seq C1 exon
TATGGTTTTGTGGGTCAGTGGATTACTCCAGGCAGAGATACAGTTGGTGCGCTGGACTTTGGCGGAGCGTCTACTCAGATCACCTTTGTGACGAAACAGACCGTGGAGAACAAGGATGACCTGATGAAACTGCGGCTGTACGGGCGAGACTACCAGATCTACACTCACAGTTTTCTGTGTTATGGACAAGACCAGGCTTTACTCCGACTGCTGGCACATCTAATCAAG
Seq A exon
GTTAAGTGCAAACTTTTACCCTGGTTTAGATTAAACGGTTACATTGTTCAGAATATAATATCTAATGTTTTCTCTTTCTTTATGCATGTTACAG
Seq C2 exon
ACTCAGGGTTCAGACACATCTATAGTCCACCCCTGTTATCCTGCAGATTACAGCAGCTCTATAAAGCTGAGCAGTGTGTTTGATACTCCATGTGTTAAAAGACAAACTCCTTATAAACCTGATGATGAGCTGCAAATAAAAGGCACCGGAAACTACAATCAGTGTCTAGGAAATGTTTCTCAACTCTTCTCCTTTAGCAGCTGCTCTTATTCCAAATGCTCTTTCGACGGAGTCTTTCAGCCCAACATTACTGGAAACTTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033953:ENSDART00000043259:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(17.6=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(20.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTACTCCGACTGCTGGCAC
R:
CCGGTGCCTTTTATTTGCAGC
Band lengths:
181-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]