GgaINT0125661 @ galGal3
Intron Retention
Gene
ENSGALG00000009058 | F1NGR8_CHICK
Description
NA
Coordinates
chr17:790058-791042:+
Coord C1 exon
chr17:790058-790285
Coord A exon
chr17:790286-790775
Coord C2 exon
chr17:790776-791042
Length
490 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTG
5' ss Score
8.35
3' ss Seq
GTGTGTTGCTCCTCCGGCAGGCT
3' ss Score
6.88
Exon sequences
Seq C1 exon
CGTGGTTGGCTCGGAGAATGGATCCAATCCAAGAAGAAGACCCTGGGGGCCATGGACTTTGGAGGCGCTTCCACACAGATCACTTTTGAAACCAGTGATGCCATTGAAGATCCCAAAAATGAGGTGATGCTGAAGCTGTACGGCCAGCCATACAAGGTGTACACCCATAGCTTCCTCTGCTACGGAAGGGACCAGGTCCTCAAGAGGCTGCTCTCAAAGGTCCTCCAG
Seq A exon
GTATTGGCACGTGCTCGCCTGTCACCACCCCAGCATTCATACAGAGTGTGAGGTACTGGACCCAGCTCCTTACAAGCACCCTGCTTTGGACTTGTGACTGCCCCCTGGGTTCAGCAGTGGGGGCTGGGGAGGGATGATGATTTGCAGAGACCCAAGGGTTGCAAGGCCTCGCGCTTCCCCTGCAGGCATCTCAGCCCTGTTCACTGGGAGGGGCCAGCTGCACACATTTCCCAGCCAACTCAACGCAACTCAACTCAAAAGCCAACGCTGGCTTTTGCCCCTTAAGCCTCTCCCACAGTTCCAGGGCTTCCTCCTCTCTCCCTAAGCCTCTGTCAATCATCTCCAGACACTGGTGGCAACTGCTGGCTTCTTTGCTCCTCTGCATCCTGCTGCCCAGGCTCATCAGCACCTCCCCACCACGAACCAGAGGCAACGCAGCACGGGCTGTGGCACAGGGGAGCTGGGATGATGTGTGTTGCTCCTCCGGCAG
Seq C2 exon
GCTGAGAACTACCAAGAAACTGTCGCCAATCCTTGCTGGCCCACGGGCTACCGCAAGAGTCTGTCACTGAGCAGCATCTATGACAGCCCCTGCACGGAGAAGGAGCGGCCCGGCCTTCCCCTCAACACCACCGTTGTCGTGTCCGGTACCGGGAATGGGAACCTCTGTGCTGTGCACGTCAACAAGCTCTTTGACTTCACCAGCTGCTCCTTCTCCCACTGCTCCTTCGATGGTGTTTTCCAACCTGAGGTTTCAGGGAACTTCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009058:ENSGALT00000014744:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(17.3=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(20.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCTTCCACACAGATCACTT
R:
AAGAGCTTGTTGACGTGCACA
Band lengths:
355-845
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]