DreINT0065063 @ danRer10
Intron Retention
Gene
ENSDARG00000070839 | evi5b
Description
ecotropic viral integration site 5b [Source:ZFIN;Acc:ZDB-GENE-041111-244]
Coordinates
chr6:29043923-29045345:-
Coord C1 exon
chr6:29045187-29045345
Coord A exon
chr6:29044070-29045186
Coord C2 exon
chr6:29043923-29044069
Length
1117 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
3' ss Seq
TTTATTTGACCTGTTAACAGAAT
3' ss Score
5.81
Exon sequences
Seq C1 exon
AGGCATCTGGCACGGACGGCGGGCCGCTGGAAAGACAGTCCACGCAAGAATGCGGCAAGTGAGCTTCAGGATGAACTGATGAGTGTGAGGCTCAGAGAGGCAGAAGCACAAGCTGAGCTCAGAGAGACCAGACAGAGAATGCTGGAACTGGAGACTCAG
Seq A exon
GTGTGAATACAAATCGCTCACCTTTACAGCATTCAGTTCTTTCATTTAGGAGACAGTGAATGCACTTTAAAACACTGCTGGCGTTTTAAATTCACAAACATTCACTATATTACATTATAGATGAAAGGTACAGTAGTATCTGAAAGAGCGCAAAAGAGACACGTGCTATATGTAGTCTCTTGTGTGTGTAAATATGTATGTACAGTGCTCACCATATATAAGTACAGCCCTCACAAATCTATATTTTAAAATCATCTTTTTAATAGTAGGCTAGAAACTTTTATATTTGTGCATATACATTAGTTTAGTCAGAACTGAAGTTTGGAGCTTATCTAACAAGATAACTTACGATAACGGTCCAAAAACTAGCACTCCCAAACATGCAAACTCCACAAAGAAACGCCAACTGACCCTGCTGAGGTTCGAACAAGCGACCTTCTTGCTGTGAGGCTACAGCAATACCTACTGTGCCACTGTATTATAGAAATTTTTTTAATACAAATTTTAAAAAGAGGAAATATCAAGAAAAGCAAAAAAAAAAAAAAAAAAGGAAAAATTTAGTTGAGATTTTTTAGGTTGTAATTTGTTTTGCAATATTTTTCTTCAATTTAATTGTATTATCTTTCAATTTCTAAATATGTTTGGGGGACTAAAATATTATTTTAATAAATATATCTGTTTAATAAATCTGTTTTGTTTAAATGCATCAGAATAAATATTCACTGAGAAATGGATAAAAATATTCATTTTCAAATTGGGGTGCACTCAATTATGCTGAGCACTGTATGTATGTATGTACATGTGTACTGTACATGTATGTACACATGTGTACTGAATGACATCCCATCCCTGGGGCAGTAGTAGTTTTGATATTGGCAAAATAACTGACTGGCTTGCAACAAAATTCCTTATAATGAAAGTAAATGTTTTGAAATATGATCTGTTGTCCACTGAAATCAAGTGGAATTGAAATATTAATTGGCCAGCAGAGGGAGACAAAGTTTATTAATTTGTGCTCTTAAATGATGGACTTTGTGTTTGAGCATGGCTTTATCACTTCAGATTGTAGTTCATTTGAGTTTTAATCATAGTTGTAATTTATTTGACCTGTTAACAG
Seq C2 exon
AATCAAATACATAGTAATCAGCTTCGACGAGCAGAACTCGAGGCACGAAATCTACAGGATCGATTGCATGTTTTGAGCAACCAGAACAAGATGTTGCATTCAGAGCTGCAGGAGACAAAGCGGAAGCAGGCTGAAATAGAGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070839:ENSDART00000124947:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.698 A=NA C2=0.782
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCGCTGGAAAGACAG
R:
CTTGCACTCTATTTCAGCCTGC
Band lengths:
286-1403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]