GgaINT0039475 @ galGal4
Intron Retention
Gene
ENSGALG00000005935 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr8:13036492-13038359:+
Coord C1 exon
chr8:13036492-13036650
Coord A exon
chr8:13036651-13038212
Coord C2 exon
chr8:13038213-13038359
Length
1562 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
CTTGTTGTCATAAATGTCAGAGT
3' ss Score
3.71
Exon sequences
Seq C1 exon
CGTCACCTAGCTCGCACCACTGGGAGGTGGAAGGATCCTCCAAGAAAAAATACAGTGAATGAGCTACAGGATGAGCTGATGACAGTCCGACTGAGAGAAGCAGAAACCCAGGCTGAATTGAAAGAAACCAAACAAAGAATGATGGAGATGGAAACACAG
Seq A exon
GTATGATATTTAACATATGAATTGACCTGAATGGTGCCAGATTAGCATCAGATGACCAATTTCATTTAATGGCCTGGACCATTTATCGGCATGGCTTTAGCTCTAAAATGTCAGTATTTTTTTTAACTGTTTTTCTCTTGATCTCTTAGACTAGGAGGGAGAATCAAGTGCATACAATCAATCTAGCATACTTTAATGTCCTTTACAGGACTAAGCTTTCACAATTTCTTACTTGGATTAACTGGTAAACTCTGAATGCATGTGAATCTTTATCTGTTCAGTTGTTATTGTGATGCTAACAAAAATATGCTTAAGGTATTTCCACCTTCACAAACCTCTACCTAACTGATGATTCACCTATAGTAATTTCAAGTCTTAAAGTAACAATGCTTTTCTTTCTGGTGAAATTGCCAGTACTAGATCATCTACTGAAAGCATGAATATGGTTACTAAGCAGGAATCTTGGTATAACAATAGCCTATTGTCACTTTTCAGTAGAAGCTTTACCTTTCACCTGCTGAGAAGAAAAAGTATATTTTAGCATTACTAAAATGTGCAGAATAGGCAAGAAGTAACTTATCTGCTAAGGTCCTTTTTATGTAACTGTAGTGCAGGTTAAATAGTCAAATCTGAAAGTGCATTACAATTAGTACATTCATATTAATTTGTGAGCTCTCAACTGAATTAATATTGAATGTGCTATTGATTGATACCTGTTAGTAACAGGTTTCTGGGAAATCTTCCCATGTATGTAAGGATTGTAAGGATGCGGTACTGAAGAGAGAGACAGGATGGTTATGCAATATGTGGTAGCTTACTACTGACAGAGGCACCACTTTCTATAGTAACCGGATAAAAGTGTTTTCTTGCCTTCTAAAACTTGTATTTAAATATTAATACTGTTTAATGTATGTTTTCTTGTTTTTCCCTTCTATTTGTTTTAGTCAGTAGGGGGCATAGGTATCCTGCACTTCAGGTTACATGCAATAACCACAAGACCTCTAGGTTGTTCTCTCAGTGTTAAGCATCGAGTATGTGTTTATGCTGCTGAGCTGTCATTTGAAACAAATGCAGTGGCTCTCATATTGTGTGTTGATGTATGCACAGCCTCATGTTAAAAAAAAAAAAGTCTTGTATTAAAGCACTGATCTTAGTTGTACTGTATTACTTCCAGGTTTTCACTGGTCAGAGAAGTGTGCACGTAGTATTTCTGATCTATTTGATGTTTCTTGGTTGCACCAGCTAGTAATTGTAATTGGGGTGCAAGTTCACAAAGTCTTTGACTTAAGTGCAAGATAATTAGAAACATATATATAGCAACTTTATGTTCCTATTCTTAAAAAGAATTTTCTATTTTAGAACCCGTGGAATATCATGGCTGTAAAAACAAATGTCATGGAAACTTTTATGATTACATTTTAAAAATTCTGAATGTGTTTTCATCAAGTTTATCTTACAGCAAATGATCTGTCAAGTCTGTTTCGTCAGACTTTAGGAAGGTAAACTAATATGAAAGATCTCTCATTGATGTGCTTTCTTTTTCTTGTTGTCATAAATGTCAG
Seq C2 exon
AGTCAGATCAATAATAACCATTTGCGAAGGGCAGAGCTGGAGGTCACCAGCCTGCAGGAAAAGGTACAGTATCTTACTGCACAGAACAAAGGACTTCTTGCTCAGCTGAATGAAGCAAAACGTAGACAAGCGGAGATTGAATGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005935:ENSGALT00000009552:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.925 A=NA C2=0.408
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACCTAGCTCGCACCACT
R:
ACATTCAATCTCCGCTTGTCTACG
Band lengths:
302-1864
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]