GgaEX0008391 @ galGal4
Exon Skipping
Gene
ENSGALG00000005935 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr8:13035852-13038359:+
Coord C1 exon
chr8:13035852-13035992
Coord A exon
chr8:13036492-13036650
Coord C2 exon
chr8:13038213-13038359
Length
159 bp
Sequences
Splice sites
3' ss Seq
AATGACGTGGGTTTTTTTAGCGT
3' ss Score
5.85
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
AGGAATAGCTCTCTCCCTGATGAGGAAAATGTTGCTAGACTACAAGAAGAACTGATTGCAGTAAAACTAAGAGAAGCAGAAGCTTTGATGGGTCTCAAAGAACTAAGGCAGCAAGTCAAAGACTTGGAAGAACACTGGCAG
Seq A exon
CGTCACCTAGCTCGCACCACTGGGAGGTGGAAGGATCCTCCAAGAAAAAATACAGTGAATGAGCTACAGGATGAGCTGATGACAGTCCGACTGAGAGAAGCAGAAACCCAGGCTGAATTGAAAGAAACCAAACAAAGAATGATGGAGATGGAAACACAG
Seq C2 exon
AGTCAGATCAATAATAACCATTTGCGAAGGGCAGAGCTGGAGGTCACCAGCCTGCAGGAAAAGGTACAGTATCTTACTGCACAGAACAAAGGACTTCTTGCTCAGCTGAATGAAGCAAAACGTAGACAAGCGGAGATTGAATGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005935_MULTIEX1-15/18=14-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.245 A=0.925 C2=0.408
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCTCTCCCTGATGAGGAA
R:
TGCTTCATTCAGCTGAGCAAGA
Band lengths:
252-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]