DreEX6022149 @ danRer10
Exon Skipping
Gene
ENSDARG00000070839 | evi5b
Description
ecotropic viral integration site 5b [Source:ZFIN;Acc:ZDB-GENE-041111-244]
Coordinates
chr6:29043923-29047245:-
Coord C1 exon
chr6:29047105-29047245
Coord A exon
chr6:29045187-29045345
Coord C2 exon
chr6:29043923-29044069
Length
159 bp
Sequences
Splice sites
3' ss Seq
TTTGTGTTTATGCTATGCAGAGG
3' ss Score
5.13
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
Exon sequences
Seq C1 exon
AGAAATACATCCCTACCAGATGAGAATAATGTGGTACGTCTTCAGGAGGAGCTAATTGGTGTGAAACTGAGGGAGGCAGAGGCTTTAACAGGCCTTAAAGAGCTTCGACAGCAGGTCAGAGATCTGGAGGAGCACTGGCAG
Seq A exon
AGGCATCTGGCACGGACGGCGGGCCGCTGGAAAGACAGTCCACGCAAGAATGCGGCAAGTGAGCTTCAGGATGAACTGATGAGTGTGAGGCTCAGAGAGGCAGAAGCACAAGCTGAGCTCAGAGAGACCAGACAGAGAATGCTGGAACTGGAGACTCAG
Seq C2 exon
AATCAAATACATAGTAATCAGCTTCGACGAGCAGAACTCGAGGCACGAAATCTACAGGATCGATTGCATGTTTTGAGCAACCAGAACAAGATGTTGCATTCAGAGCTGCAGGAGACAAAGCGGAAGCAGGCTGAAATAGAGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070839-'30-25,'30-24,31-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.170 A=0.698 C2=0.782
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACGTCTTCAGGAGGAGCT
R:
ATTTCAGCCTGCTTCCGCTTT
Band lengths:
246-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]