RnoEX0033408 @ rn6
Exon Skipping
Gene
ENSRNOG00000002039 | Evi5
Description
ecotropic viral integration site 5 [Source:RGD Symbol;Acc:2322879]
Coordinates
chr14:2978949-2988823:+
Coord C1 exon
chr14:2978949-2979089
Coord A exon
chr14:2980819-2980977
Coord C2 exon
chr14:2988677-2988823
Length
159 bp
Sequences
Splice sites
3' ss Seq
TCTCATGGTTTCTGCTTTAGCGT
3' ss Score
8.65
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
AAGAACAACTCATTTCCTGATGAGAATAACATTGCAAGGCTTCAGGAAGAACTCATTGCTGTGAAGCTGAGGGAAGCTGAAGCCATTATGGGTTTGAAAGAACTTCGACAGCAAGTCAGAGACTTAGAAGAGCACTGGCAG
Seq A exon
CGTCACGTAGCTCGGACTTCTGGGAGGTGGAAAGACCCACCCAAGAGAAACGCCGTGAGTGAGCTGCAGGGTGAGCTAATGAGCATTCGCCTCAGAGAAGCGGAGACCCAGGCAGAGATGAGAGAGATGAAGCAGAGGATGATGGAGATGGAGACGCAG
Seq C2 exon
AACCAGATCAATAGTAACCAGCTTCGAAGAGCAGAGCAAGAGGTGACCAGTCTGCAGGAGAAGGTGTGCTCCCTGTCTCTGAAGAACAAGGGGTTGCTTGCCCAGTTGAGTGAGGCGAAGCGCAGGCAGGCAGAGATTGAATGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002039-'46-43,'46-42,47-43
Average complexity
S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.191 A=0.755 C2=0.306
Domain overlap (PFAM):
C1:
PF065706=DUF1129=PD(4.5=4.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAGGCTTCAGGAAGAACT
R:
ATTCAATCTCTGCCTGCCTGC
Band lengths:
251-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]