BtaEX6016586 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011363 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr3:50990274-51003143:+
Coord C1 exon
chr3:50990274-50990414
Coord A exon
chr3:50991659-50991817
Coord C2 exon
chr3:51002997-51003143
Length
159 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTTTTTTAATTTTAGCGC
3' ss Score
9.62
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
Exon sequences
Seq C1 exon
AGAAACAACTCCTTTCCTGATGAGAATAACATTGCAAGACTTCAGGAAGAACTCATTGCTGTGAAACTGAGAGAAGCAGAAGCTATTATGGGTTTGAAAGAGCTTAGACAACAAGTCAAGGATTTGGAGGAACACTGGCAG
Seq A exon
CGCCACTTAGCTCGTACTACTGGGAGATGGAAAGACCCACCTAAGAAAAATGCCATGATTGAGTTACAAGATGAACTGATGACCATCCGACTTAGAGAAGCTGAAACACAAGCAGAAATAAGAGAAATAAAACAGAGGATGATGGAAATGGAAACACAG
Seq C2 exon
AACCAGATCAATAGTAATCATCTTCGAAGAGCAGAGCAAGAGGTGATCAATCTACAGGAGAAGGTGCAATATCTTTCTGCACAGAACAAAGGATTGCTTACCCAATTGAGTGAAGCAAAGCGCAAACAAGCAGAGATTGAATGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011363-'23-22,'23-21,24-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.177 A=0.566 C2=0.354
Domain overlap (PFAM):
C1:
PF065706=DUF1129=PD(2.3=2.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAGACTTCAGGAAGAACTCA
R:
CTGCTTGTTTGCGCTTTGCTT
Band lengths:
242-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]