HsaEX0023367 @ hg19
Exon Skipping
Gene
ENSG00000067208 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:3501]
Coordinates
chr1:93073138-93091491:-
Coord C1 exon
chr1:93091351-93091491
Coord A exon
chr1:93089733-93089891
Coord C2 exon
chr1:93073138-93073284
Length
159 bp
Sequences
Splice sites
3' ss Seq
TATAATTTTTTATGCTTTAGCGC
3' ss Score
7.76
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
AGGAATAACTCCCTTCCTGATGAGAATAATATTGCAAGGCTTCAGGAAGAACTCATTGCTGTGAAACTTAGAGAAGCAGAAGCCATTATGGGTTTGAAAGAACTTAGACAGCAAGTCAAGGATTTAGAGGAACACTGGCAG
Seq A exon
CGCCACTTAGCTCGTACTACTGGGAGATGGAAAGACCCACCCAAGAAAAATGCTATGAATGAGTTACAAGATGAACTGATGACCATTCGACTTAGAGAAGCTGAAACACAAGCAGAAATAAGAGAAATAAAACAAAGGATGATGGAAATGGAAACACAG
Seq C2 exon
AACCAGATCAATAGTAACCATCTTCGAAGAGCAGAACAAGAGGTGATTAGCCTACAGGAGAAAGTGCAGTATCTTTCTGCACAGAACAAAGGACTCCTTACTCAATTAAGTGAAGCAAAGCGTAAACAAGCAGAGATTGAATGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000067208_MULTIEX1-15/18=14-16
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.191 A=0.741 C2=0.395
Domain overlap (PFAM):
C1:
PF065706=DUF1129=PD(0.1=0.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAGGCTTCAGGAAGAACT
R:
TCTGCTTGTTTACGCTTTGCT
Band lengths:
243-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)