GgaEX0008391 @ galGal3
Exon Skipping
Gene
ENSGALG00000005935 | EVI5
Description
NA
Coordinates
chr8:14787633-14790140:+
Coord C1 exon
chr8:14787633-14787773
Coord A exon
chr8:14788273-14788431
Coord C2 exon
chr8:14789994-14790140
Length
159 bp
Sequences
Splice sites
3' ss Seq
AATGACGTGGGTTTTTTTAGCGT
3' ss Score
5.85
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
AGGAATAGCTCTCTCCCTGATGAGGAAAATGTTGCTAGACTACAAGAAGAACTGATTGCAGTAAAACTAAGAGAAGCAGAAGCTTTGATGGGTCTCAAAGAACTAAGGCAGCAAGTCAAAGACTTGGAAGAACACTGGCAG
Seq A exon
CGTCACCTAGCTCGCACCACTGGGAGGTGGAAGGATCCTCCAAGAAAAAATACAGTGAATGAGCTACAGGATGAGCTGATGACAGTCCGACTGAGAGAAGCAGAAACCCAGGCTGAATTGAAAGAAACCAAACAAAGAATGATGGAGATGGAAACACAG
Seq C2 exon
AGTCAGATCAATAATAACCATTTGCGAAGGGCAGAGCTGGAGGTCACCAGCCTGCAGGAAAAGGTACAGTATCTTACTGCACAGAACAAAGGACTTCTTGCTCAGCTGAATGAAGCAAAACGTAGACAAGCGGAGATTGAATGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005935-'23-24,'23-23,24-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.266 A=0.925 C2=0.393
Domain overlap (PFAM):
C1:
PF065706=DUF1129=PD(2.3=2.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCTCTCCCTGATGAGGAA
R:
TGCTTCATTCAGCTGAGCAAGA
Band lengths:
252-411
Functional annotations
There are 0 annotated functions for this event