GgaINT0039474 @ galGal4
Intron Retention
Gene
ENSGALG00000005935 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr8:13035852-13036650:+
Coord C1 exon
chr8:13035852-13035992
Coord A exon
chr8:13035993-13036491
Coord C2 exon
chr8:13036492-13036650
Length
499 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
AATGACGTGGGTTTTTTTAGCGT
3' ss Score
5.85
Exon sequences
Seq C1 exon
AGGAATAGCTCTCTCCCTGATGAGGAAAATGTTGCTAGACTACAAGAAGAACTGATTGCAGTAAAACTAAGAGAAGCAGAAGCTTTGATGGGTCTCAAAGAACTAAGGCAGCAAGTCAAAGACTTGGAAGAACACTGGCAG
Seq A exon
GTATGGGTACCAAGACACTGTTGCACTTTTTCTTTTTCTAATGGATGATGACAAGGCAAGAAAATCTTGAGACATGTTGAGTAGGAACTAGTGACTATGGATTGTGAAAGTACCACAAACTTCACTTCAGAAGTATGTTGGAAGTCGTTTCCCAATTGTTGCAGATGACAGAGAGGCCTGTACAAACAACCAGCCATCCTGGTAGAAAGGAAGTACCCCATCAATACTCCTACTTCAGTAAATGTTGAAAGCTCTTTTTCAGGATATACTTGAAATCCGCTGACTTAATCTAGTTGGGAATTGCTGTCTTTGGCTTTTTGATTCTCTTTCCTTAAAACTTGTGAGGTCTAAAAATCTAGAAATCTATACAGTAGCATTCTTAGCAACTCTGCATCGTACAGCTGAGACATCAAGGAGTTCTTTGAAGGAGATTACTTAAATGAAATTAGGGAACACCAGGAAAGATTAGATATACCAGCAATGACGTGGGTTTTTTTAG
Seq C2 exon
CGTCACCTAGCTCGCACCACTGGGAGGTGGAAGGATCCTCCAAGAAAAAATACAGTGAATGAGCTACAGGATGAGCTGATGACAGTCCGACTGAGAGAAGCAGAAACCCAGGCTGAATTGAAAGAAACCAAACAAAGAATGATGGAGATGGAAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005935:ENSGALT00000009552:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.245 A=NA C2=0.925
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCTCTCCCTGATGAGGAA
R:
CTGTGTTTCCATCTCCATCATTCT
Band lengths:
294-793
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]