HsaINT0058450 @ hg38
Intron Retention
Gene
ENSG00000067208 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr1:92624176-92625934:-
Coord C1 exon
chr1:92625794-92625934
Coord A exon
chr1:92624335-92625793
Coord C2 exon
chr1:92624176-92624334
Length
1459 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAT
5' ss Score
7.88
3' ss Seq
TATAATTTTTTATGCTTTAGCGC
3' ss Score
7.76
Exon sequences
Seq C1 exon
AGGAATAACTCCCTTCCTGATGAGAATAATATTGCAAGGCTTCAGGAAGAACTCATTGCTGTGAAACTTAGAGAAGCAGAAGCCATTATGGGTTTGAAAGAACTTAGACAGCAAGTCAAGGATTTAGAGGAACACTGGCAG
Seq A exon
GTATATTAATATATTTTGTGTGCTTTTTTAAAAGAGAGTAAAACCGAAATATCCAATTTGTAAGAGTTTGAAGTACCTGATGACCTATAGTAGATGAGTTTAAAGTGAGAGAGACCCTGTTTAATGTCAAAATTGAGAGTATTTATAAACTGAAAGTGCACTTAAGCTGTTTCTCCCTCTTTAATTCTTATAATAAAATAAAAGATACAGTAGACATCAGATAATATTTTTGTCATTGTACCATTGTGCCTTGTGTAACTTTTTCTGCAAACTGTGAAAGTGTTCTATATAATACATATTTTGTCTTAAACTTTGATATTAAGTCCATTGTTGGTTAGTGTGAAACACCAGAAGGGTGACAACATTATAAATTTAATGTATAAATTAGTAACTTAGTTACCTCACCAGATAAATGACATTTATCTGGTATGTGACCACAAATTTATTCATGTATGAGGGAAATGTTGACAAGGAACAAAATACATATTCTATATAAGGACCGAAATTAGGCCTTGACATTGTCATGCCTTTTTTTAAAACATGTTTTGACAAAGTATCAGATTGCAATAAACTTGAAATTTTAAAACAAAAAAGACAAAACTTGTCTTTTATCACAGATATTTTGAGAAACACTGCCCTTAACTTCTAACATTCCTTCCTTAATGGCCCCATTTTTTTTCTAATGTATTGGGATTTCATTGAAGATAATATGAAAAATCTCTCATTAAAAAAATTACAGTGAAAATTGTAATCTTTTCAAGAATTAATCCTCAGTATATAGAGAAAAAATTTGAACTGTATTTGAGTTTATATCCCAGATCTGCACTGGCTGTGTGTGATCCTCCTAAAGTTACTTAATCACAGTGTTCATTTTCTTACCTGTGAAAAGCCAAAAATGTTTCCACACACATTGCCAAATGTCCCCTGGCGGGGCAAAATTGCCCCAGTTGGGAACCAATAATGGCAATAATGTGAATGATGCTTCCTAAAGTTGTTTAATATGGTGACCCTAGGCAGTGAATTCTAAAATTGCCTGTCTTTCTTCTCAGGTCTCTCTTTTCTCCAATAAATTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAGTAGAGACTAGAGACAGGGTTTCAACATGTTGGCCAGGCTGATCTCAAACTCCTGACCTCAGGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGAGCCACTGCGCCTGGCCAATAAATTCTATCTTAAATATACTTAAGATCTGCAAAGGTCTTTTTATGAAACCCTTTTATTCAGATGATAATAGTGCCTGATTAATAGGATTTTCTAGGGATTAAATAAAATAATGTGTGGAAAGTGTTTTATATATCACAGGCCTGAAATAAGCGCTCAGTAATATTAGCTCTTATTTTGATACTGAGAGTATTTGTTGCAATATAATTTTTTATGCTTTAG
Seq C2 exon
CGCCACTTAGCTCGTACTACTGGGAGATGGAAAGACCCACCCAAGAAAAATGCTATGAATGAGTTACAAGATGAACTGATGACCATTCGACTTAGAGAAGCTGAAACACAAGCAGAAATAAGAGAAATAAAACAAAGGATGATGGAAATGGAAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000067208:ENST00000370331:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.191 A=NA C2=0.741
Domain overlap (PFAM):
C1:
PF065706=DUF1129=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAATAACTCCCTTCCTGATGAGA
R:
TGTGTTTCCATTTCCATCATCCT
Band lengths:
299-1758
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development