MmuINT0059526 @ mm10
Intron Retention
Gene
ENSMUSG00000011831 | Evi5
Description
ecotropic viral integration site 5 [Source:MGI Symbol;Acc:MGI:104736]
Coordinates
chr5:107795699-107797953:-
Coord C1 exon
chr5:107797813-107797953
Coord A exon
chr5:107795858-107797812
Coord C2 exon
chr5:107795699-107795857
Length
1955 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
AGTAATGTTTTATGCTTTAGCGT
3' ss Score
5.67
Exon sequences
Seq C1 exon
AAGAACAACTCATTTCCTGATGAGAATAATATTGCAAGGCTTCAGGAGGAACTCATCGCTGTGAAGCTGAGGGAAGCCGAAGCCATTATGGGTTTGAAAGAACTTCGACAGCAAGTCAGAACCTTAGAAGAGCACTGGCAG
Seq A exon
GTATGTCAGGCCTGACGTGCTTTCTGAAAGGAACTAAAACCGATGCACTTAGTTTGTGTGAATTTGAAATAGCTGGTAATGAAGAATCTTGCTTTGTGTCACGATTGAGACACCCCCAAATCCTCCCAGACACATCCTTTGCCTTCCTTCCCACCTTTAGGTCCTCCTTTTCCTAAACTCACTAGTACAGTTTGTGCTGCCCAGATACTTATGGTTATAGGGTCATCCATTTGAGTATGATTAATCTACTAGGAGCCACATTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTCCTTTTTTTTTTTTTTTTTTTTTTTGAGACAGGGATCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGTCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTTTTGGGATTAAAGGTGTGTACCACCACTGCCCAACTGAGGGGCCACATTCTTAAAGAAAACTGATGCTGCCTTATCCAGGAGCAACTGTCAGGAGCTCAAGAACTTGGCCTGCTTCATGCTGGAATGCTCTCTGGCTTGATTATTATACAGCTGCTGAGAGCTCAGGAGTGCAGTGGTCCTGTGACTCCCAGAAGACACTGCTGTGCCCCAGTCTTCCCCAATCACTGGCTTTAGGCTTTTCCATCCTCTCTGACAGTGGTCCCCAGGTCTTGCTGGCAGGAAGTGTGACACAGATGCCTCCTTTATGGCTGAGCTGTCCATGTGAACTTGTTCTCTGCACTTTGATCACTTGCCAGCTTCTGTGTTAGCTACAGCCCACTGCACGGGGAAATTTGTCTGATGAATTGCAGTAACTTATGGTATAGAAATGGAATTTATATTTTTGGTTGTGAACCTAGCCTTTAACTGCTGAGCCATCTCTCCAGCCCTAGAAATGGAACTCAGAGGGCAAGTTGATAGTCTATTCATTTATCAACCAAAGATTTTCTTTACTATTTGGAAAGTGTGAAACACCTGAAGGGGACGCCAATGATATATGTACATTTTTAACTTCTTTTGAAAATGCTTGTGACAAAATAAATGCTGCTTTAGGTATATTCCCACAAATGTATCTACTTGTGAGAGAAATTAGGGAAAGAGCAAAATGTAGCAATCTGTAAGACAGAGAGGAATGAGTTTTTAAAAAGTAGGTACTGGGGTGGTGAAGCGCACACCTTTAATTCCAGCACTTAGGAGGCAGAGGCAGTCAGATTTCTGAGTTTGAGGCCAGACTGGTCTACAGAGTGACTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTCAACCCCCCCCCCCAAAAAAAAAAAACCCTACACAGTTTCAGAATGGTGGACTTTGTTTGAATGGGGTGGGAGGGTTGGGGAACTGGGGGAAGGTTGAGAGGGTGGGAGGATGGGAAGAGAGAGAGATCTAGTAAATGTTGAACTTGGTCTTTGAGGGGTCCTGTGAGACGACTCAGTGCGAGGAGACAGTTGCTGCAAGGCCTCGGAGGACCTGAGTTGGGTCCCCTGGATTCACACTGTGAAAGAGAACTGACTCTTGCAGGTTGTCCTCTGCGCTCCATGTATGTGCTGTGGAGCATCCCCACCCCAAAACCAGTGATATGTGTAATATAATTTTAGAAGAACATGGCTTTTAAAAAATGAATTTTGAAAAATACCCAGGTTTGCAACAGTTTAAATTAAGCTGGGCATGGTGGTGTGTATCTGGAATCGCAGCTCTTAGGAGGCCTGAGACAGGAAGAGCATATGTCTAGCCAACCAGGAGTACTAATTACAAAGCAAAAGCGTCTCTTAGCAAACAGTGCTTACACACGTGCTCTGTAAAGTTTGTTCATCCTCTATAGAGTACTTGTTGCGATATAGTAATGTTTTATGCTTTAG
Seq C2 exon
CGTCACTTAGCTCGAACTTCTGGAAGATGGAAAGACCCACCCAAGAAAAATGCTGTGAATGAGTTACAGGATGAGCTGATGAGCATTCGCCTTAGAGAGGCGGAAACACAGGCAGAAATAAGAGAGATGAAGCAAAGGATGATGGAAATGGAGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011831:ENSMUST00000112642:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.191 A=NA C2=0.717
Domain overlap (PFAM):
C1:
PF065706=DUF1129=PD(4.5=4.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGATGAGAATAATATTGCAAGGC
R:
CTGTGTCTCCATTTCCATCATCCT
Band lengths:
286-2241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types