DreINT0066284 @ danRer10
Intron Retention
Gene
ENSDARG00000100292 | fam166b
Description
family with sequence similarity 166, member B [Source:ZFIN;Acc:ZDB-GENE-070209-41]
Coordinates
chr10:17119710-17120837:-
Coord C1 exon
chr10:17120705-17120837
Coord A exon
chr10:17119932-17120704
Coord C2 exon
chr10:17119710-17119931
Length
773 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
3' ss Seq
AACAAATGTTCTTTCGACAGGTT
3' ss Score
9.1
Exon sequences
Seq C1 exon
CCTAGACGATCGAACAGCCCTCTGATAGCCCTTTCTAAAGATCCTGCTCCATACAAGGCCCCTGACCCTTGGAAGCCACCAGGCTCACCGTACTTCATGGAGGACAGTAGCCCACATAAGTATTTCATCTCAG
Seq A exon
GTTAGCCAGATCACTGTACACTGAAAAAAAATTATTCAAAGATGATTCTTTGGATTTACTCAATTTTTTTATGTTAAGTGGTTGTAAACAATTTATTTGGGCTGAATTTAAACAAACAAATTAAGTTGAACATTATTAAACTTAATTTGTTTGTTTAAATTCACCACAAATAAATTGTTTGCAACAGTTCTGCATGCAACACTTTTTTCAGTGAGGATAGCAAATCATTGTATAAATGCACTGTAAATGTAAAGGCGCAAACACATTTCCCTGACATTTCCTTGACATACTTGTTTCATTTATGTTGTTTATTTACGTAAATATTTTAAAAACATAAAAATAACTTTATGCTTGCAACAAAAGATTCCCTAATGGTTATTTTTCGATTCGTTTGTAACCATAAATAACACACCCTGAGAAAACCGAATCACCCAATAGGAAAACCATGCCAACACACGGAGAAAATGCACTCTCTGCACAGAAATGCCAACTGGCCCAGCCAGGACTCGAACCAGCAACCTTCTTGCTGTAAAGTGACAGTGCTAACCACTAAGCCACCGTGCCACCTTAATAGATATTTTTTTTGAATTAATCTGTTTTTTTATTTAGAATAACTAATAAGTAATATATTTATGATATTACCGTGTATAAATCATCTTTTATGAGTCCTGATTAATTTGACTAACATTCTCAGCACATTCTGAGCCATAAATTGTTAGCTTGAAATTAGCTCTACATTTCACACCATTGTGTAACAAATGTTCTTTCGACAG
Seq C2 exon
GTTTTACTGGTTATGTCCCCAAAGCCCGGTTTCTCTTTGGTACTGGATATCCTACCATCACCAATAAGGCATTGATCCAGTTTAGCAAGGAAATGAAGGCAGGTCCGGCATCTTTGCAGAAATATAGCCTGCAGGAGGAGGATTCCTCCAACTTACCTCTGATACCCACAATATACCCCTCCAAAACAGGTCTCCTGCCATCCTACACAGGCCACATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100292:ENSDART00000170083:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=NA C2=0.053
Domain overlap (PFAM):
C1:
PF106294=DUF2475=PD(12.9=20.0),PF106294=DUF2475=PU(9.2=13.3)
A:
NA
C2:
PF106294=DUF2475=PD(89.2=77.3),PF106294=DUF2475=PU(31.7=17.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTAGACGATCGAACAGCCCT
R:
TGTGTAGGATGGCAGGAGACC
Band lengths:
342-1115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]