HsaINT0060209 @ hg19
Intron Retention
Gene
ENSG00000215187 | FAM166B
Description
family with sequence similarity 166, member B [Source:HGNC Symbol;Acc:34242]
Coordinates
chr9:35562377-35562697:-
Coord C1 exon
chr9:35562646-35562697
Coord A exon
chr9:35562572-35562645
Coord C2 exon
chr9:35562377-35562571
Length
74 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CTCAGTGTCCCCATCCTCAGGCT
3' ss Score
6.9
Exon sequences
Seq C1 exon
GCTTCTCCCTACTCCATGGATGACAGGGACCCTCGGAAGTTCTTCATGTCAG
Seq A exon
GTGAGAGCTGGGGGGTCAGGATCAGAGGCGTGGGGAGGCCCCAGGATGCCTTGGCTCAGTGTCCCCATCCTCAG
Seq C2 exon
GCTTCACTGGCTATGTGCCCTGCGCCCGCTTCCTCTTCGGCTCCAGCTTTCCTGTGCTCACCAACCAGGCACTGCAGGAATTTGGGCAGAAGCACTCACCAGGCAGTGCCCAGGACCCCAAACATCTCCCCCCACTTCCCAGAACATACCCTCAGAACCTGGGTCTTTTACCTAACTATGGGGGCTACGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215187-FAM166B:NM_001164310:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.455
Domain overlap (PFAM):
C1:
PF106294=DUF2475=PU(8.5=27.8)
A:
NA
C2:
PF106294=DUF2475=PD(89.8=80.3),PF106294=DUF2475=PU(35.1=19.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGACCCTCGGAAGTTCTTC
R:
GTATGTTCTGGGAAGTGGGGG
Band lengths:
177-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)