DreINT0067436 @ danRer10
Intron Retention
Gene
ENSDARG00000051896 | fbn2a
Description
fibrillin 2a [Source:ZFIN;Acc:ZDB-GENE-090112-4]
Coordinates
chr10:16446463-16447895:-
Coord C1 exon
chr10:16447770-16447895
Coord A exon
chr10:16446691-16447769
Coord C2 exon
chr10:16446463-16446690
Length
1079 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAAC
5' ss Score
3.22
3' ss Seq
TATTTGTTTTGTCCAAACAGATG
3' ss Score
9.74
Exon sequences
Seq C1 exon
ATGTGAATGAATGTGAGGTGTTTCCTGGTGTGTGTCACAATGGACACTGTGTGAACACTAGAGGCTCATTTAAATGTCAGTGCCCAGAAAGCCTCACACTGGATGTCACTGGACGCCTCTGTGTTG
Seq A exon
GTAAACCACCCTAATTTTGTGTCAAAGTATAATTCAAAGTGTAATTTAGTTGTTTTATTAGATCATAATTGCTTGATTCATATGGATTTAGGTGTCTTTATGAACTTTTGGGGTGACACAGTGGGGCAGTGGGTAGCGCTGTTGCCTCATGGCAAGCAGGTCGCTGGTTCAAGCCCCGGATGGGTCAGTTGACATCTGTGTGGAGTCAGTCACTCAGTCTTTATTCATTTCCCCCAGGGCATTCATTTCCTTTATTCATTTCCCGATTTAGTTGCAGCACACAAGCATATTACACATAATACAAAAAACACATTGTACAATGCAAATCTACCCTAAATTTAAAAACTTTACAGTTGAGGGGATGAATGAAAGTTTAAACCGATATTTTTTATTAATAGGAGTTCTGTATCGAATACCAGAAGATAAAACTCGTGGTGCATAGTATGGGAATCATCTGACAGAATTCTCTGAGCTTTGCTCAAAACTTGTCTATGGTATAACTGAGCCATGGTCATCTGTATTCTCCCTGTTATTTTTTCTCCTAGGTTCACAATTTTCTCTAAACAACTCTTATTTTTTACACTTAGAGTTTGCTTGTTCTCCTCATGTTGGCATGGGTTTTCTTTGGGTGCTTTGGTTTCACCCACAGTCCAAAGACATGTAGTATAGGTAAATTATTGTAAATAAGCTAAATTGGCTGTTGTATATGTGAGTGAATGGAAGAGTGTATGGCTGTATCCCAGTGCTGGATTGCAGCTTGAAGGGCATTTGCTGCGTAATAACACGTACTAGATAAGTTGGCGGTTCATTCCACTGTGGCAACCCCTGATTAATAAAGGGATTAAGCCATAAAGAAAATGAATGAATGAATGTACCTTTGAAGCTTGAACCCAGATTTTAGACTGAATAAACTGAATAAAATAGGATAAGACAATGTTAAAAACAACTTAATTTCAGTCGTTTATCTGTGTAATGTATTACAAAAAATAGAAAAAAAGTCTTTTGGATATTATTAAAATAAAGTATTAAAAACATCTGTGCAAAATGATGGGAGTAAATTATTTGTTTTGTCCAAACAG
Seq C2 exon
ATGTTCGTTCGGAGCCGTGCTTTCTTACTTACGAAGAAGATGTGTGTACACAGCCGGTACCAGGACGCTTCCGCATGGACATGTGTTGCTGTACGGTGGGTTTGGCTTGGGGCAAAGATTGTGACTTATGTCCTGAGCCTGGTACTCGGCAGTTTGACACCCTGTGCCCAAGAGGACCAGGCTTCGCCAACAAAGGAGACGTTCTCACTGGCAGAGCTGTCTATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051896:ENSDART00000149104:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3)
A:
NA
C2:
PF0068312=TB=WD(100=65.6),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAATGAATGTGAGGTGTTTCC
R:
GACAGCTCTGCCAGTGAGAAC
Band lengths:
346-1425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]