GgaINT0062411 @ galGal3
Intron Retention
Gene
ENSGALG00000014686 | FBN2
Description
NA
Coordinates
chrZ:55707099-55709930:-
Coord C1 exon
chrZ:55709805-55709930
Coord A exon
chrZ:55707327-55709804
Coord C2 exon
chrZ:55707099-55707326
Length
2478 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
TGTTGTTTTAAAATGGGCAGATA
3' ss Score
4.26
Exon sequences
Seq C1 exon
ATGTAAATGAGTGTGATGTTTTTCCTGGTGTTTGTCCCAATGGACGATGTGTTAACAGTAGAGGCTCATTTCATTGTGAATGCCCAGAAGGACTGACGCTGGATGGAACAGGGCGAGTGTGTTTAG
Seq A exon
GTAAGAACACAGTCAATTTTGGCAGCCTTTTAGCTGTGTTTAACAGCTATCTGAAATAATTCTTAAAGGAGTAAGGAGAGACATTTGGTTTGTTTCAGAACTGCTGACTTTGTTAAATGTATGTTTTAGTTTATGTCTGCTTGGATTTCAGATACCTGTTAATTCAGGGAAGAGTTGGGGAATATGAATGTTTGTGATTTGTCGTATTCTGCCCTCACTGCAGTCAATAGGTTTTACTAGAGTGTTGCCCTTACTGTGATTCACATTGCCCAGTCTAAGTCACTGTGAGCTAGGCAATAGGCAGTTTGCTGGCCAGCCAGGGGCTTGTAATGCATAATGACTTGCTCTTTTTGCTATTTCTATCTACTTATTTTATGACATTAAGGTACTATCCTGTAGCAGAAATATGCAGACTGAATTGATTTGTTTGAAAGTAAGCAAAATGGGTGTAGGTAAAAATAAGACTTCATCTTTGTTGTGCAGGACACGTATCTTCTACAGACAAAACATGATGTCAGTGAAGACATAACGTCCTCTACAAAAAAAGCTTTAGGTATTAAAACTATTAAGCTCTGTATGTAAGTTAAAGGAAACAAAAATATTGTGTAGGAAGTGTAGGTAGCATTTATTAGTCTGTTAATGGAAGTGCATGAATGAAATATGGTAGTGCTTTCTACAGTCACAAGTTTTATAAAATATTAAATTGCTACACGTTTTTGTAGCATCTAAACTATCCTAATAACACCACATTGCCTGACAGTGGATGTGCTTGGTTTTCTTTTCCTTTCCTCTTTAACCAGATTTTCTATTGGATATTCTGAAAGAATTTTTGTTTTTTACATCTGATAAGCTGTGAAATCCATATTCAGATAGCATAAAATATTTACATGGTTTTAAACAAGCTGCATTTCATAATTTAGAATGATATTTATCTATAAGATTATGGGAAAAAATAGTGACAGATTTATTGTGATTTGTAATGTATCCTAAAAAGGGCAGGTCTGCTTTGACTGCAGTTAGTGCCACACATGCCTTCTCCATCTATGGATTCAGCTTTTTGCAGTACAACTTTTTTTTTTTTTTTTTTTCTTTTTTACCATTTCTGATGACTATGAAAATATAATTACTGACAGCATTTGATTTCTTTTGAGAAAACAGTACGGAACAATTGCAATTATTGAGACCTTGCTTCACGTCAGTCAAGAATTTGGCTGTTCTAATCCATATTTTCTACTTCAGTGGTGTTCTCATTCTTCTAGATTCAAGTTTAAGCAATCAGTTTTCCTTTAGATGTTCCATTGTTTATCAGTAGCTGATACGAACAGCTACCAGGTTGTGTTTTGTTGCTGGTGATGTTTTTTTAAAATATGAATGTAATTCTAGAGATGTTTTTTAAAATGAGAATTTTGAAAATAAACAGATGCACATTCTCAGCATAAAAGTTCTCTTAGAAAAAAGAAATAATTCAAAGCAAAGTCTGCCAAGATGCATGTGTATAGCATATGCAGTTTTTCCTGTTAGGTTTTACTTCTTTTTTTTTTTTACCCCATACTTATCCCTGTTTTACTTCTTAGTGAGAAACTTCATAAGAAGAGGTAGTTGCAACAATGGAGTTGTTTTCAAGCAATGCACAGAGTTCCTTTACCCTCCAATCCATTTTTTCTTATCCTACTTTAATGAAAAAATGTCCTTTTACATTTCAAGATATGTGCCTTCTCCTGTGCTACATAATGCCGTAGATTTCTCAAATACTTTATTTCCTAAAGGGTCCAATGGCTGATTTTAGTGATAACAAGTATTTATTAGAATTATGTTTGCTGAATCTGTTGAAGTGAAAATAAATGTGATATTGATATAAAGAACTTCGCAGGAAACCATGAATATTCTTTAAACAATTTTCATTTCTAATATTTTCTTCTAAATTGTTTACCTTAGGATGTATATAAGGTAATCCATATTGTAAAATGTTGTAGGATGTTTATGGAAAATAGTTCACCAGATCTTCCGTGTTGTATTTTTTAAATAATGCATTTTCTCCAAATCTTTTTGTGCTAAGTAAATAAAATGTTAGGTTTCTTAAAGCCTAACTTCCAGTTCACTGTATCATATCAAATATTCTGGCTTCTAGTCCATTTTAGTCATACTAGGATAATGTGGAATCATAGACATCTTCTCTAACACTGCCGTAATTGTCTGTTTCCTGTTATTTGTACAGTTTTTCAGATTTTTGAAATTCAGAGACATTTTCCTAAGTTGCAGAAGTTAGCATTTAGATAAATACTTCTACTGCTACGTGATACAACAGAGATTTGGAAGCTTACCAGTAGCAACTTCTAACTTCAACTCTGTGCAGTGTATAGCGAAATCTGTCTTGCAGAAACTGAACCACATAAGTAATGCCCTGGAAGCAGCTGCTTCTGAAAGACAGAAAACTCCACTGAAGTATAACATTTCCCTTTGTTGTTTTAAAATGGGCAG
Seq C2 exon
ATATTCGCATGGAGCAGTGTTACCTGAAATGGGATGAAGATGAATGCATTCAGTCTGTACCTGGCAAATTTCGTATGGATGCCTGCTGCTGTGCTGTGGGTGCTGCCTGGGGCTCTGACTGTGAGGAGTGTCCAAAGCCTGGCACAAAGGAGTATGAGGCTCTGTGCCCCAGAGGTCCTGGCTTTTCCAACAGAGGAGATATTCTAACTGGCAGACCATTTTATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686:ENSGALT00000023666:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3)
A:
NA
C2:
PF0068312=TB=WD(100=54.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]