DreINT0067822 @ danRer10
Intron Retention
Gene
ENSDARG00000099139 | fbxw5
Description
F-box and WD repeat domain containing 5 [Source:ZFIN;Acc:ZDB-GENE-040426-2571]
Coordinates
chr5:53829857-53830989:-
Coord C1 exon
chr5:53830794-53830989
Coord A exon
chr5:53830015-53830793
Coord C2 exon
chr5:53829857-53830014
Length
779 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTA
5' ss Score
7.64
3' ss Seq
TATTTCCTGCATGTTTGTAGCGG
3' ss Score
5.11
Exon sequences
Seq C1 exon
GATGTTAGAATGGCAAGTGGCCCTGGCTTGCCGGACAGTCTGGTGCTGGAAATCTTCCTGCATCTCCCTCATAAGGCGGTGTTGAGCGCTGGACTCACTTGCCATCAGTGGTTTGCAGTGTCTCGGGATGAGTTTCTCTGGAAGGAGCTTTTCTACAGCTACTATCGCATCCCACGCACTGTGCCTCGACACCCAG
Seq A exon
GTACTACAACAGTAAATCCACATGGAAGTTCTATTAGCACATATTCACATACAGTACATGTGTGGCCATGATTATTATTCTGAAGTTCTCTGAAGCAAGGTTATTTTAGTAAATGAAAACTAAGACTAAAATGTTGACATGACATGTAAAAACTACAGTTAAATCAAACTAACAAAATTCTCTGAAAACAAAATTATTATTAGCAAAAATATGGAAATATGAATCACTCATTTTGTAAGGGAAAATCTGAATTGCGAATGGTTAGTATGAGTACAGAGTTAACATATCTCTACTTATATATTGATAAGTAGAAAGATCTCAAACATAAAACATGAGTTTTATTTTTTCTCCCTCTGCCAATAATGTATACTAGGCATGCTTAACCAAACATGTTTAATATGAAGAAGTTTAGGCATTTCTTCATAATAATTGTTCCTTTTTTATATAAGTTGCATTTGTATAGTTTTATGTTCAGTGCTTGGTCGGACAATTATTTTTATTTCTAAGTGGAACAAGTTTGCTCAAGAGTTAATGTAAGCTGTGTAAACATTAAACTTTTCTCTGGAATTGTTTTGTTAACTTTTGCTAAACTAGAATTGCTAAAACTGAAGTCGAAATCCATAAAAAAAGAACTAAAATTCAACTGAAATTTATAGCCAATAAAACAAAATAGTATTAAAATAAAGACTTTTCTACTTGTAATGTTGTTTGATTGCCACCATGTTGCAGTACTCTCTGCTGCTTTTGTAAGTAACAAAGTATTTCCTGCATGTTTGTAG
Seq C2 exon
CGGCTGTGTCGTGGTACAGGGAGTTCAAGCGGCTATATGACTGCATCCCCTGTGTAGAGGTTCAGACTTTAAAGGAGCATCATGATCAGGTGCTGCATTTAGCCTTCTCTCACCGCGGCCATCGATTTTCCTCCTGTTCCAAAGACTGCACTGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099139:ENSDART00000165719:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF129372=F-box-like=WD(100=73.0)
A:
NA
C2:
PF0040027=WD40=PU(89.7=66.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTTAGAATGGCAAGTGGC
R:
TGCAGTCTTTGGAACAGGAGG
Band lengths:
346-1125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]