GgaINT0125790 @ galGal3
Intron Retention
Gene
ENSGALG00000008966 | FBXW5
Description
NA
Coordinates
chr17:897274-900272:+
Coord C1 exon
chr17:897274-897521
Coord A exon
chr17:897522-900114
Coord C2 exon
chr17:900115-900272
Length
2593 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
3' ss Seq
TGTGCTTGCTTGTGTTCCAGCTG
3' ss Score
9.88
Exon sequences
Seq C1 exon
CCGGGCCGGGCCCGAGCTGAGCGCCGCTCGCTCGCGGGTGCAGCGGCAGGATGACACGATGGCCGCGGGCGGCCCCCTGCTCCCGGACAGCGTGCTCTTCGAGATCTTCCTGTACCTGGACCACGCCGACGTGCTCGCGGTGGGCCTCGTGTGCCGGCAGTGGCGCGCCGTGGCCCGCGACGAATTCCTGTGGAAGGAGCTCTTCTACCGCTACTACCGCGTCTCCCGGGACGTGCCCCGGCACCCAG
Seq A exon
GTGCGCCGCTCGGGGCTCCGCGGGCGGGCGCGGCTGGGCCGTGGTGTGCCCGCAGGGGGTCGGGAACCGCCCCGCGCCTTCTGGACGGGCGTCGGAAGGCCCAGGCGCTTCGGCTCTCCCTTCCGTCCTGGAGCGTTCCGCGGGTGGCCGCCGGCCCTGCAGTGAGTCACGGCGTGCCGCAGCCCGGGTGAATTCCATGGTAATCGCTGCTGGCTCTTCCCGATCGGGGCCTTACGGCTCTGCTCTGGGCTCTGTCCCTTTCTCATCTGCACTAGGAGGGGCTGGAGGTACGCGTTAGCTGCTCAGGCCCTATTTCCATAAGGTGTAGGCAGCAGCTGCAGCCTGACTGACAGAGGAGAGCCCCGCAGTGGGTGAGTGCACAGTAGTGTAATTGTACAGAGGGCAAATGCTAACGTGGCACCTGACCCACTTTGCTGGGGCATGTCAGGCTTGATCTTAGCCTCTGCAATAAGAAAATGACCCATTAACAGCGTTGGCTGGCCATCCTGCACAGCCCTCCCTGAGGAGAGCTGTCAGCAGCCTCTGTGTGGGCAACCTGTGCTGTACTGCTGCTCTCTTGATGAGAAACAGGAGTGCAAAGCCTTGTATAGAGGGGTAACCCAGTGCTGTCCCCTGAGCTGTTCCTGGGAGTGGGGCCCCTTGTCACCAGTGGGGGTCTCTGGGAGGCAGAAACGTGGTGGCCGAGGAGGACTCTGCTCGGTTCTGTCCCCCAGGATGTGCACAGTGCTCCCAGCATCAGCTGTGGCACTGAACTGAGTTCCTGCTCTCTAGCTGTGATCTGTGATGGCTACAGGAGGATGAGAAGAAGCAAATAGGATTGAGCAATGGGAAACCCTCTGCAGCAGGAAACACCAGCACAAAAAGGCTTCGAGTAAGGAGAAGATGTGGATGCGGCAGTGCATGCTGCTTGGTTTCACTTGCACAGTCTGTAGACCTTTTTTGGATTAGGGCTGGAGCACCTGTCCTGTGAGGAAAGGTTGAGGAAACTGGGCTTGTTTAGCTTGGAGAAGAGAAAGCTCCGGGGATACCTCATTGTGGCCTTCCAGTACTTGAAGGGAGTGTAATATAAACAGGAGAGGAACGGCTGTTTACGAGGGTGGACGGTGATAGGACAAGGGGGAATGGTTTTAAACTGAGACAGGGGAGGTTTAGGTTGCATATTACGGAGGAGGTTTTTCACCCAGAGGGTGGTGACACACTGGAACAGGTTGCCCAAGGAGGTGTGGATGCCCCATCCCTGCAGGCATTCAAGGCCAGGCTGGATGTGGCTCTGGGCAGCCCGGTCTGGTGGTTGGTGACCCTGCACATAGCAGGGGGTTGAAATTTGATGATCATTGTGGTCCTTTTCAACCCAGGCCATTCTATGATTCTAGGATATGATGATTAAAGATGTTATCATTGAGTTTTATCTGAGACACTTGGGCCAGACTCATTCACTTCATGTCTCCTGAATGTAAGCTGGCAGCCCTGTTCTTCATAGCTGATGGGGATGGTCAGGGTAGCTCAGTAATGGATGTGGCTTCTTCCCAGACTACAGGGATCGTTCCTGGGGGTGATGCCAGGGGAGATGGGCAGTCCTAGGAGCTGGGGAGTGCCCTACCAGCCCTGAATGGTACTGTTTGAGCATCCACAGAGCCATAAGGGGAAGCATTGGGAGTGCTTGGCCAGATGGGATCCGTCCTGACTGTTTTCCTGGTAGGTGGGATGAAACCAAGGACTTTAAGGGGGGGATGCCAGAGCATTCTGCCCACTGAGCAATGCTGGGATTCCCTGGCAGCAAGCTGTGGCCTGCCTCAAGGGAGGGTGCCTCCCAGGCTACAGTGAGTTCCAAAAAACCTTCTGTCCTGTTCAGTGTAACTAGGAAAGTTGGCCATTATCCATATAAATGTCTAATCCTCTTTACTTCCTTGGGATTTGCTGCCACAACAACTCTATAGGCACTTTGTTAAAAATCCCCTTTATCTCTTTACTGGCAGTCGGTGTAACTTCTCTCAGTGTACTCCAGGCTTTCCTACTTGCAGGACTCCTCGTATCCAGCTCCAGTACTTCTCTTTTGTTTCCCGTTTCTTGACTCGTGCAGATGCTTTTTCCGGATCTCATACCCCTTCTGGAACCTTCTTAATTCTGCGTCAGACAAGACAGTCAGAGCGGAGCCCAGTACCCTGAGGAACAGCTTTTCTTTCATTACATGACAGATGTGCTTGCAGTGTGCTGGAGCACGTCTGCAGTTCTGACTTCTGTTTTGTCCTGAGCAAAGTTTTTGTTAGCTAGCTAATAGCTGTTCTCTGGGTATTTCTTGTAGTGGCTGCAATGGCTTAGAAAGTAATGATATGATGAGAAGTTGTAGGTTCCCCGGAAGAAGAGATTTTTTTGTGTATGGGAGTGGGAAAACTACTGAGAAAAATGTAAGGCCCCGCTAACACAGCTGGAGCTGCAGGGGCTGTGGCCACAGCAGAGCTCCTGGCAGCACTGTGTTTTACTAGAGGCTGATGCTGTGCCTGCAGTATTCACCTCAGATCTGTCACTTCTCTCCCATGTACATTCTTGTCATATGTGCTTGCTTGTGTTCCAG
Seq C2 exon
CTGCTGTCTCCTGGTATGATGAGTTCCAGAGGCTCTACGACACCATCCCTTGCATTGAAGTGCAGGCCCTGAAGGAGCACAATGACCAGGTGTTGCACCTCAGCTTCTCTCACTCGGGCTGTTTGTTTGCATCGTGCTCCAAAGACTGTACTGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008966:ENSGALT00000014582:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF129372=F-box-like=WD(100=67.6)
A:
NA
C2:
PF0040027=WD40=PU(89.7=66.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]