DreINT0068484 @ danRer10
Intron Retention
Gene
ENSDARG00000051768 | fhod1
Description
formin homology 2 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-110623-4]
Coordinates
chr7:34331622-34333891:+
Coord C1 exon
chr7:34331622-34332562
Coord A exon
chr7:34332563-34333735
Coord C2 exon
chr7:34333736-34333891
Length
1173 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCAA
5' ss Score
2.22
3' ss Seq
CTTTATTGTTTTTCCTACAGAAA
3' ss Score
10.19
Exon sequences
Seq C1 exon
AGGGTGGTTTACAACGTCAGGGCAGCACAGCGGAGCAACACAGCACCCTCTCTGATGACCAGAGGTTCGTGATGGACATGCTCTACTCCAAAAGCAACACCAGTTCCGGAGCTCTAGAAAGTCCCAGTCTGGAAAGTGCACTTGAGGGCCATGGGATCAGAAGCATGGCGGTTCGGCTCTCCAGACTGCAGTCTTCGTCTTCTCAGCCCACAGAGGACCCCTCCCGGCGGGCAGAGCTGGAGAGTCTAGGTGGCACAGCTGATGCTGCTCGTGCCAGACTAGCAGAGGAACAGAAGCTGAAGAAGCTGCGTCCACAGTACAGTATTGAAGCCGAAACGCATTCACAGAGTCTGGAGAAGACCTTGATGACACCACTGTCCAGAGGGAGTCAGGATGCCTGGGATAAACTGCAGCCCAGCTCCAGACCTCTGCGGATTAAAGATCTTGATTTCTCAGATCTGATGGAGGAGGAGGATATTGATGTGCTGGATATAGACACTTTTGATACTGGCCTGTCTAATGTTATACCTCCACCTCCTCCTCCAGTGCCAGGACTGGGTTCTGCTCCTCCTCCTCCACCACCACCTCCTCCCCCTGGACCTGCTGGTCTGTTTTCACCACCTCCACCTCCTCCTCCTCCTCCACCTGGATTTGCTGGTTTGGCTTCACCTCCTCCTCCACCTCCTCCTCCTGGAGGTTTGAGTATTCCTCCACCTCCCGGACTCTTTACCACGTCCCCGTCACAGGGTTTGGATCCTGCTTTTGTGAAGAAACGGAAAACAGTAAAGTTGTTCTGGAAGGAACTGAAGCAATCTGACAGCCCCAGAAAGTGCAAGTTTGGGAGGGGAACAGTGTGGGCTTCACTTGATAAAGTGGATGTCGATACAGCCAAGCTGGAGCACCTTTTTGAGTCCAAAGGAAAGGATCTTCCAGTAGCAAAG
Seq A exon
GTGCAATGAGCAAAAACTCTTTTGATATAACTCTATTTTGTAATAATCTTATAGAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTATATGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATATATATACAGGTATATATATATATAGTGATAGTACACCGTTTATGTGTCATATACAGTCATGTAAAACAATTATGACATCCTATGAAATTTTAATGTTTCCATATTAGGACATAAAACATATTTTTGGCAGGTATTTACTAAATATTTAAAAAATAAAACCTCAGATGAGCAGAATGTGAGTGAGCGAGCGAACACAATGCCCATACAGCTAAACCCAAAATTAGGTCATGTAACAATACACAAAGGAAAGACAACAATCAAGGTGTTGCAATAGTCCATTCTAAGCCCAGACCTCATTCTGACTAAAATGCTGTGACGAAAGCTGTGGAAAAAAATCCAAAATGATCTTTTATGTGTTTTTAATGTTATAAAACTTGCAATTTTGAATTTCAAAAGATCATGGTATAAATATTTAAAATGACAGTTAGTGTTTTTGAGCTGCGCTGTGATTCTTAATGATGTTTTTAAAAGTCATTGAATTATTCTTGTTCTAAATATGTCTCACAAGATTTTTTAATATGTAAGCTATTGTTACATGGAATGATGTCTTAGTGTAAAAATCTGTAAATCAGAATGAAAATGTATAATGGTTAATATTTTTTGCTAAAAAAAAAAATATTAATCAGTATACACTGCAATTGCCTCCTAAAAAAAGAAAAGAAAAGAATTCTATTCCACTTTTACTGTTTTGATGCTTGAAAACCCTTTGTGTATTTGACCCTCAGTTAATAAAACTAATACACATAAACTCTATATAAAGTTTTAAATGAAGCATTAAATAATCGGACACACAAATGCCAAACTGGTAAACTTGTTTATGAATAATCTACTCAGACGGTCTAAAGAATTACTATATTTACTATTTGTCTCTGACATTTAAGTCATTTGATTAATCAGGGGTCACTGTGGGGATGACTACTATTGAATGCAGGTTTTTGTATGGCCTGCACTTGCTATAAAGTATTTAGCTTTGTTCATTTAAGTATTCTTTATTGTTTTTCCTACAG
Seq C2 exon
AAAGGTGCTGAGGTGAAGAAAGCAGCAATTTCAGTGCTTGATCCTAAGAGAAGCAATGCCATCAACATCGGCATGACTGTATTACCTGCTATACATGTGATCAAAAGTGCCATCCTCACCTTTGACGAGTTTGCCATCAGTAAAGAAGGCATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051768:ENSDART00000073447:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.828 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=PU(16.8=19.7)
A:
NA
C2:
PF0218118=FH2=FE(13.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCACCACCTCCACCTCCT
R:
GCTGCTTTCTTCACCTCAGCA
Band lengths:
356-1529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]