HsaINT0064150 @ hg19
Intron Retention
Gene
ENSG00000135723 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:17905]
Coordinates
chr16:67265942-67268170:-
Coord C1 exon
chr16:67267560-67268170
Coord A exon
chr16:67266098-67267559
Coord C2 exon
chr16:67265942-67266097
Length
1462 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
CCCTTCCCCCAACCATGCAGAAA
3' ss Score
6.74
Exon sequences
Seq C1 exon
ATGCCCGGCAACTCTGGGACTCCCCAGAGACAGCCCCTGCAGCCAGAACACCCCAGAGCCCTGCCCCCTGTGTCCTGCTCCGGGCCCAGCGAAGCCTTGCACCAGAGCCCAAGGAGCCACTGATACCAGCAAGCCCCAAGGCTGAGCCCATCTGGGAGCTCCCTACCCGTGCACCCAGGCTCTCTATTGGGGACCTGGACTTTTCAGATCTAGGGGAGGATGAAGACCAGGACATGCTGAATGTAGAGTCTGTGGAGGCTGGGAAAGACATCCCAGCTCCCTCACCCCCACTGCCCCTGCTCTCGGGAGTACCCCCCCCTCCCCCACTTCCACCTCCCCCACCCATCAAAGGCCCCTTCCCACCACCTCCACCTCTACCTCTGGCTGCCCCTCTTCCCCATTCAGTGCCTGACAGCTCAGCCCTCCCCACTAAGAGGAAGACAGTAAAACTTTTCTGGCGTGAGCTGAAGCTGGCTGGGGGCCATGGAGTCTCTGCAAGCCGCTTTGGGCCCTGCGCCACCCTCTGGGCTTCACTGGACCCTGTCTCAGTGGACACGGCCCGACTGGAACACCTCTTTGAGTCTCGTGCCAAAGAGGTGCTGCCCTCCAAG
Seq A exon
GTAAATCCACTCATCTGCAAGGTAGCCCCAAGGGAGGCAGGAGGGAATCAGAGCTTAAGGATCTGACCTGTTGGAGCTAGTCACTCACTTCCCACATGGGGAAACCAAGGCAAAGAAAGGAGTAGGAAATTGTCCAAGGTCTCCTAACAAGGGATCAGCAGTGCCCCAACTAGAATCTAAATGTGGCCGGGCATGGTGGCTCACACCTGTAATCCAAGAGTTTGAGACCAGCCTGTGCAACATAGTGAGACATTATCTCTACTAAAAGTTGGTCTGGGTGTAGTGGCTCATGCCTGTAATCCCAGGACCTTGGGAGGCCGAGGCAGGTGGATCATTTGAGGTCAGGAGTTCGAGACCAGCCTGGTCAAATTAGCAAAACCCCGTCTCTACTAAAAACACAAAATTAGCCAAGCGTGGTGGCGGGCACCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCCGGGAGGTAGAGGTTGCAGTGAGTCGAGATCGCACCATTGCACTCCAGCCTGGGGGACAAGAGCAAGACTTCGTCTCAAAAATAACTAAATAAATAAAAATAAATAAATGTTAAAAAAAAAATTAGCCGGGCATGGTGGCTCACCCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGCAGATTACTTGAGGCCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATATGAAAATGAGCTGGGCGTGGTGGCTCATGCCTGCAATACCAGCTACTTGGGAGGCTGAGGCAAAAGAATTGCTTGAACCTGGGAGGCGGAAAAAAAAATGTTAAAAAAAAAAATAGTTGGGTATGGTGGTACACGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAAAATCCCAGAAGATAAGCTGCAGTGGGCGATGATGGCACCACTGCACTCCAGCCTAGATGGTAGAGCCAGGCCCTGTCTCAAAAGAATCTAAGCTCATCCCCATGACTTACACATTCCAGGTTGCCAGTTTGTCAGTTGTGGGATCATTTGGCAATCTAGAGGAGGGCCTTGGAGTGCCCTCTGAGGTTGCTGTCCCAGCTAGTCCCTTCCTCAGTCTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTTGCTCAGTCACCCAGGATGTAGTGCAATGGTGTGATCTCAGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCCCGCCACCACGCCCAGCTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGGTCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGTCAGGCCCCCTTCCTCAGTCTTACACTGCCCTTCCCCCAACCATGCAG
Seq C2 exon
AAAGCTGGAGAGGGCCGCCGGACAATGACCACAGTGCTGGACCCCAAGCGCAGCAACGCCATCAACATCGGCCTAACCACACTGCCACCTGTGCATGTCATTAAGGCTGCTCTGCTCAACTTTGATGAGTTTGCTGTCAGCAAGGATGGCATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135723-FHOD1:NM_013241:13
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.703 A=NA C2=0.269
Domain overlap (PFAM):
C1:
PF0218118=FH2=PU(17.7=32.4)
A:
NA
C2:
PF0218118=FH2=FE(13.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCTCCACCTCTACCTCTG
R:
CACAGGTGGCAGTGTGGTTAG
Band lengths:
342-1804
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)