DreINT0074379 @ danRer10
Intron Retention
Gene
ENSDARG00000103200 | gpr107
Description
G protein-coupled receptor 107 [Source:ZFIN;Acc:ZDB-GENE-061103-130]
Coordinates
chr5:31880497-31880855:-
Coord C1 exon
chr5:31880725-31880855
Coord A exon
chr5:31880541-31880724
Coord C2 exon
chr5:31880497-31880540
Length
184 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
CAATTGCTTTTGTCTGATAGGTC
3' ss Score
8.13
Exon sequences
Seq C1 exon
GTTCTGGCCAATGTGGCATACATTATTATCGAGTCCACAGAGGAGGGCTCCAGTGAGTATGGTTTGTGGATGGAGATCTTGTTTCTGGTGGATCTGCTCTGCTGCGGTGCTATTCTGTTTCCTGTGGTCTG
Seq A exon
GTAAGTGCTCTCTGTGTTTGTCCTTTTGATGTGGCCTATATTTAATTTTCTATGCCATAAATGATATCTTGTCTAGACTAATGGACTGAAGTCTGATTTCTGCATTATATAAGTGAATGGTCAGCTTGTTTAGCTTTTTATCTTTAGTAATCGAAGACTAAAAGCAATTGCTTTTGTCTGATAG
Seq C2 exon
GTCCATTAGACATTTACAAGAGGCATCAGCGACAGATGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103200:ENSDART00000168870:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(14.5=100),PF069126=DUF1275=FE(24.9=100)
A:
NA
C2:
PF068148=Lung_7-TM_R=FE(5.1=100),PF069126=DUF1275=PD(3.5=37.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGCATACATTATTATCGAGTCCA
R:
TTTGCCATCTGTCGCTGATGC
Band lengths:
163-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]