Special

MmuINT0072808 @ mm9

Intron Retention

Gene
ENSMUSG00000000194 | Gpr107
Description
G protein-coupled receptor 107 [Source:MGI Symbol;Acc:MGI:2139054]
Coordinates
chr2:31044203-31047410:+
Coord C1 exon
chr2:31044203-31044333
Coord A exon
chr2:31044334-31047366
Coord C2 exon
chr2:31047367-31047410
Length
3033 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
3' ss Seq
CTCCGCGTGGTTATTTTTAGGTC
3' ss Score
9.21
Exon sequences
Seq C1 exon
GTCCTGGCGAATGTGGCCTACATCATCATAGAGTCCACTGAGGAGGGCACAACTGAGTATGGCCTATGGAAGGACTCTCTGTTCCTGGTTGACTTGCTTTGCTGTGGCGCCATCCTCTTCCCAGTGGTGTG
Seq A exon
GTAAGCAACCTTAGGGCAGTGTGTGCAGAGTCACAGGGTAGCTCTTTGCATAAGACTGCCCTGTGGACCCCAGGCTGCCCCAGATAACTAGCTCAGAGTGGGATTCTGGGACTCCTGTAGAGCTGGTCTGGACCACAGGCTGCAGGGTCCAGTGGTCATGTTAAATATCAGCCACAGTTTGACAAGGGCTGAGTAGGAGAGTAATTCTTCTTGCCAGGTTAGATGGAAAATGAGAACATATGCTCACATAAACTAATGGTAGTCCTCAGGCCACCCAGGTTTTGGGCTCTAGAGAATAGCTTGCTCTGATCCAGAAATGGCAGCTTTGATTGTACATTAAAGGTGTCATTGCTGTGCTCTTGTGAAATCATGGCAGAGAACTGCCGATTGCTGCTTTAGTGCAGTCATGCAGGCAGAACAGGCTGGTGATGGTGCATCTCCCGCTCATCCTTGGTGTCTGGCCACTGCTTCTGACAGAGCTGTTCACACCGAGTTAATGTTGAGGAGTGAGGCGCGGTCTTTGGTAACGCTCGTGCCAGTAAGTCAGTGCTTTCTAGGATCCTAAGGTTGTCTGGTATGTTGTCCAGCCACTCTGATTTTTTCATGGTTCTAGGTAGAGTCACCCTCCCCATTGCTGCCAGAGTAGAAGCGAGCTAGGAGGCCTGGGCTGTGGCCCGGTGGCAGAGTAACTTGCCTCCTCGTCCTTGAAGGTGTGCATTCCTTCCCAGCATAACATAAACCTGTCAGAGTGGTGCATGGATGCAGCACGGAGGAAGTCGAGGCAAAAGGACCATGAGTTCAAGATCATCCTCTGCCACATAACATCCTCTGAGACCAGTCTGGGCTATGTGAGATCCTGTCTCAAAAAAGAAATTGGGTGTTGCCTTTGACTCCCCCTGAGACACAAGGACGGGTTAGGTTGCAGTACCATAACAATTGCTGGCACATAACTGGGACTGCCTGCCCATTGCAGACAGCCCTAAAAAAAGAAAGGAAATGGGGTTAAGACCATTACCATGCAGTCTCACAGCTGCACTGCTGTCTTGCCCGCAGCAGGCAGCTCAAGCATCTACCCAAAATAGTCAGTGCTATTGCTGGGTAGTGACGACATTGCTGGGAGCAGGAGTTAAGTCCTGCCCCTAATGTCTGCAATTGTTGAAACACTGAAGTACAAGGATCCCAACTGACTATTGTCTCACTTTTCTACTGCTATGATAAGATACCATGACCAAAGCAATGTCTAGAAGAGAGAGTTTATTTGAGGATTATGGTTTCAGAGAGTTAGAGGCTGGGAGCATGGCAGCAAGCAAGCAGGCATGGCACATGAGTAGCTGAGACCTCATATCTTGACTGTAAATAGAAAGCAGAGAATGCTAACTCAACCTTAAAGCCTGTGTGATGGTTTGAATATAGTTGGCCCAGAGTGGCACTATTAGGAGGTATGACCTTGTTGGAGGAAGTGTGTCACTTTGTGGGTGGACTTAAGACCTCTTCCTAGCTGCCTGGAAGCCATTCTTCTCCTGACTGGCTTTAGATCAAGATGTAAAACTCTCAGCTCCTTTTCCAGCACCATGTCTGCCTGGACGCTGCCATGATTCCTGCCTTGATGACAATGGACTAAATCTCTGAACCTGTAAACCAGCCCCAATTAAATGTCCTTTATAAGAGTTGCCTTGGTCATGGTGTCTCTTCACAGCAATGAAACCCAAAACTAAGACAACCTACCTCCAGTGACATGCCCACTTCTAGAAGGTCACACCTCCTAATCCTTCCCAAACAGTCCCACCAGCTGGAGACACAGCACTCAAGTATATGAGCTTATGGGGGGCATTCTCATTCAACCACCGTAAGCATAGAGCTACTAGTGGTCATTTCTTGTCACCTGATCCAGCTCTGAGCAGGTGCCTAATGACAAGATTCCTTGTGCACATTCTGAAAATTGCTGTAAGAGATGAGGTTTTAATAAATATAGAAGAAACCGTATCAGTGGGCCACTGAGATGGAGTTTTATCCCTGGGACCCACATGGGAAAAGGAGAAAACCAATACCAGCAGGTTGTCCTCCGCCATGCACACATGTGCGTGTGCACACACGTACACATTGAGTTCAATACAAGTAAATAGCACTATTAAATTTTTGAAATACTTGATCCAGCCAGCCTTGGTTCAGCACTGTCATAAATCACCTTTATGCTGGTAGCATTGATGTGCTCATTTCTCATGAAGCTGGGTATTTTACTGAGGCTTTAGAAGTGGTTTATCTATAGATAAGAGGGTCAGCCTTAGAACAGGAGCCCTGCCTGCGAATCCCTGGCTCGATTCCCTTGCACGTCCTTGTCTGTCTGCTCAATGCAGGCTTTCCCCTGTGGCTGTGAGCTGTACCTGCAGCTCCAAGTCTTTCTGATTTTATGTCTTGTTCTTTGAGCAGGGATTCACTGGGGAGCTCTGTCCAGCCTGATGCTCACCATAGCTCAGGGTGGTCTTGAACTCTCAGCAGGCCTCCTGTGTCAGCCTCCTGAATGCTGGGATTGCAGGCCTGCACCACAGTGCCTGTCTCCAAGGCACCTTTAATAATGTTACTGTCCCCTGTCTAGACCATAATGGTGGTGATTAGTTATTAGAGACTGGCCTCTTCCAGGTCTGTGAATCTTACCAAGTGCAATGAGCTCGTGTCAAGCCCCAGACCGTCACAGCTGCTAGGAATCAGCAGTCACTTTCTCTGGGGTCCTTTCCCTGCCTAGCAGTGCTGCTAGTCTTCAGAGGGACAGGGGAGTCTGCGGAGTGAGAGCAGAATTGTTTCTCTCGCCCCTCCTGCTGGCCCTGATTCTGCCAGCAGAGGTCCTCTCCCCCCAACCTGAGCACCAGGCCAAGGGTGGACTGACACTGGTCTCTTGTTTTAAGGAGGGGGCTGTCTAGTCATCTGGTCCAGATACTTTGGTTTATAATGGGGCTTGGGTCCCAAGCTTCTAGAGCCATAAATAGAAGCGAATGCAGGCTCGCCCACTAACCTTTGTCTCCGCGTGGTTATTTTTAG
Seq C2 exon
GTCAATCAGGCATTTACAAGAAGCCTCCGCCACAGATGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000194-Gpr107:NM_178760:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF068148=Lung_7-TM_R=FE(14.7=100)

							
A:
NA

							
C2:
PF068148=Lung_7-TM_R=FE(5.1=100)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000056739





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Conservation


Human
(hg38)
chr9:130104551-130107495 
LOW PSI
HsaINT0071243
(GPR107)
Human
(hg19)
chr9:132866830-132869774 
LOW PSI
HsaINT0071243
(GPR107)
Rat
(rn6)
chr3:10656615-10659683 
LOW PSI
RnoINT0066895
(Gpr107)
Cow
(bosTau6)
chr11:100460963-100464365 
LOW PSI
BtaINT0068389
(GPR107)
Chicken
(galGal4)
chr17:5836565-5838386 
ALTERNATIVE
GgaINT0124994
(GPR107)
Chicken
(galGal3)
chr17:6423075-6424896 
LOW PSI
GgaINT0124994
(GPR107)
Zebrafish
(danRer10)
chr5:31880541-31880724 
LOW PSI
DreINT0074379
(gpr107)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"