GgaINT0124994 @ galGal3
Intron Retention
Gene
ENSGALG00000004052 | GPR107
Description
NA
Coordinates
chr17:6422944-6424940:+
Coord C1 exon
chr17:6422944-6423074
Coord A exon
chr17:6423075-6424896
Coord C2 exon
chr17:6424897-6424940
Length
1822 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TCTACTTCTTAATTTTTCAGGTC
3' ss Score
11.37
Exon sequences
Seq C1 exon
GTGCTAGCAAATGTGGCATACATTATTATAGAGTCAACAGAAGAGGGAACAACTGAATACGGACTATGGAAAGAAATCCTTTTCCTGGTAGACTTGCTGTGTTGTGGTGCCATCTTATTTCCAGTGGTATG
Seq A exon
GTGAGTTGCTGTGTGTGATCGTTTCTGAGTACTGATGCCGTGAGCTATTTCTCAACTAATGGGTATGGATGTTAGAGGTTAAGAGGCTGCCGAAGCAGAGAAGTAAATGTCTGTCCTTTAAGTCAAGTCTTCTGTCAATTTCTTAAACTGTTTCAGTCTTAGCACTTCAGTTCAATGTTGTTGAAGATGCTTGCTTTGGAAATGTTCAAGTGGGGGGCCTTTAAAAGGCATGGCCAGGACAGTGCAAGCAGACTACAGGTGCCTTTGAAACTTGAAATCTTTCAGAAGTGCTGATTTGCTTACATTGAAAGATGGGGTTTTGTTAGTGACTGGGATTGGAAAGTAGGCTGCTAAATTCTAAAACAGTGGTGTTGTCTGAGATCAGAGCTTCTTTCAGCCAGAGTAGTGCTGCATATTTACTGGACTGTTTAGAAGAAATAATCCCACAGGGAGCATTTCCCTGCTCTTCCTTCCACTCTACTTGGCAATGAAAAATGTTGGTTATATAAAACTCAACGAAAACACAGATAATTCAGATAAATGCTATTGTTGCTGCTTGCCAGTTAGGCAGAACATTTATATTCTAAATTCATTTTAGTCTTAATTGAAAAAACAGCTGCATCTAAGGGAGGATTTGAAGGAGCTTCTGGCTGCTCAGTTTTAAACACAGAATATTCTAATTTTTTTCAAGTATCTCCAGCATGTTTTTCCTGAAGTGCAGAAGGAGTGTGTCTGTCTAGTAAATGTGTCTTCACTCAATAGTGTGCAGCTCTTGAGTGTTTTGGAGAACTATTTTGTAATGTGTGTGTTACTTTGTAGATGCGCGTGAGCTCCATGGTGGCTTGCTAGGGTGTGTTTCAGCTGCACTTACCTTCCCAGTTCTCTGTGTAAAAACCAAACCCAGCAGTCTTAGTAGCCTCGTGCCAATGCAAGTAAATGTCTTCCAAGAAATTTGCACAACCCACTTGACACTCCCCCACTCCAGTCAAAATGCTGCAGCTCTTCTGAGGATGACAGCATTTGGGTGTGGTAAATAAAACTACAGGAATACGATCTTTTATTACAGAGATTCTGATTCCCTATGATAAAGGAAACTTTTTCAGTCACAGCTCTTGCTATATAATGCCAGAATATGTACATTCTGCATAGTGACATGCTAGTACAAAACTTGCATTTGTTCTTCAGATGCGGTTTTGTTATGGAAAGTGTTCGAATGGACTGTCCTGTAACTGTTTATATAGGGTACAGCCAGCGTTCCTCCATTGTCATGGTACCAACATAAACTGGCAGTGAAACCTAGGGCATAATCCTGCCCCTTTTTCATCTGTGCAGTCTCACTGCCTCTGGTGGGATGAGTCATGTGAGTGAGGTGACTAAGCCTTGGCCATTGAATTTCCATTCCTGCAGGGTAGCTTCTGTTACATAAGTAGCCTGTGTAGCCATGTAAGCTGTAATCAACTATTTAAATGAAAAGAGCTTAAAAGAGCAGCGAGGTGCCAAATGCTTGGCAGTACTCTGAATAGTAGCTCAGCTTACTTGTACGTGTGGTAAGCATTATGCTGGGAAATGCCCCAGTTTCTCACTCTGCTCTGTCCCAGCTTTCTGTAGGCTGAAGTAGGCTCTAGCAGTTTAGATTTCTTAATCATAAGGAGGTGCAGATATTTTAACTAACTGCTTGGGATGGGGATGAACTATATGCAGTGCTACGCATGCTAAGGCACAGTTAATTATGAGCATAGCCCAGCCATAAAGAGCTAATAGAACTGTTAGAGCTCTGGAGGGCTGCAGTGAAAAGAGCTTATTCTACTTCTTAATTTTTCAG
Seq C2 exon
GTCAATAAGACATTTACAGGAGGCTTCAGCAACAGATGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004052:ENSGALT00000006449:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(14.7=100)
A:
NA
C2:
PF068148=Lung_7-TM_R=FE(5.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]