DreINT0074395 @ danRer10
Intron Retention
Gene
ENSDARG00000096651 | gpr108
Description
G protein-coupled receptor 108 [Source:ZFIN;Acc:ZDB-GENE-121214-129]
Coordinates
chr1:58370275-58371213:+
Coord C1 exon
chr1:58370275-58370392
Coord A exon
chr1:58370393-58371082
Coord C2 exon
chr1:58371083-58371213
Length
690 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
GCGTGTATGTGTGTGCGCAGGTT
3' ss Score
8.31
Exon sequences
Seq C1 exon
GCTGAAAGGTGCTCTGCTGTTCATCACTCTGGCTCTCATCGGCACCGGCTTCGCCTTCGTTAAATACATCCTCTCAGACAAAGAGAAGAAGATCTTCATGATCGTCATCCCTCTGCAG
Seq A exon
GTGTGTGTGTGTGTATCTTTGAGTGTTTGTGATGTCTGTATTTGTGTGAGTTTTTGTTGTCTGTAATGTGTGTGCGTGTGTATATGTGTCTTTTGTGCATATTTGTGTGTGTGTGTATATATGTGTATGTTTGTGATTATTTGTGTGTGTTAGTCTGTTTGTGCATATTTATGTGTGTGTCTGTTTGTGCATATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTCTGTTTGTGCATATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTTTGTGCATATTTGTGTGTGTGTTTGTGTGTGTGTGTATGTGTCTGTTTGTGCATATTTGTGTGTGTGTGTCTGTGCATATTTGTGTGTGTGTGTATATATGTGTCTGTTTGTGCTTATTTGTGTGTGTGTGTGTCTGTTTGTGCATATTTGTGTGTGTGTGTGTATGTGTCTGTTTGTGCATATTTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGCATATTTGTGTGTGTGTGTGTGTGTATATGTGTCTGTTTGTGCATATTTGTGTGTGTGTGTGTGTATGTGTCTGTTTGTACATATTTGTGTGTGTGTGTGTTTGGTTTGTTTCGGTGACTAATACTGTGTTCTCTCTCTGTCTTTGTGCGTGTGCGTGTGTGTGTGTGTGTCTGCGTGTATGTGTGTGCGCAG
Seq C2 exon
GTTCTGGCGAATGTGGCCTACATCATCATTGAGGAGACAGAGGAAGGCTCCAGTGAGTACGCTCTGTGGAGGGAGATCCTGTTCCTGGTGGACCTGATCTGCTGCGGAGCTGTGCTGTTCCCCGTCGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000096651:ENSDART00000152747:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(14.8=100)
A:
NA
C2:
PF068148=Lung_7-TM_R=FE(16.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAAAGGTGCTCTGCTGTT
R:
AGACGACGGGGAACAGCA
Band lengths:
248-938
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]