HsaINT0071264 @ hg38
Intron Retention
Gene
ENSG00000125734 | GPR108
Description
G protein-coupled receptor 108 [Source:HGNC Symbol;Acc:HGNC:17829]
Coordinates
chr19:6732025-6732380:-
Coord C1 exon
chr19:6732263-6732380
Coord A exon
chr19:6732156-6732262
Coord C2 exon
chr19:6732025-6732155
Length
107 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
3' ss Seq
CACCCCCGCCGCCTGCGCAGGTC
3' ss Score
7.4
Exon sequences
Seq C1 exon
GCTGAAGGGCGCCCTCCTCTTCATCACCATCGCCCTGATTGGCTCAGGCTGGGCCTTCATCAAGTACGTCCTGTCGGATAAGGAGAAGAAGGTCTTTGGGATCGTGATCCCCATGCAG
Seq A exon
GTGCGGATGGAGCAGCCTCCGGAGCAGGGCGGGGAGGGCTGCACAGGGCAGTGGGGGCAAAGGGGAGCGTGCCAGGCAGTGCCCACCCACCCCCGCCGCCTGCGCAG
Seq C2 exon
GTCCTGGCCAACGTGGCCTACATCATCATCGAGTCCCGCGAGGAAGGCGCCAGCGACTACGTGCTGTGGAAGGAGATTTTGTTCCTGGTGGACCTCATCTGCTGTGGTGCCATCCTGTTCCCCGTAGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125734:ENST00000264080:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=PU(22.9=96.0)
A:
NA
C2:
PF068148=Lung_7-TM_R=PU(10.5=90.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCGCCCTCCTCTTCATC
R:
AGACTACGGGGAACAGGATGG
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development